Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G084220.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02420.1 | HORVU1Hr1G084220.5 | AT5G49540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G093680.1 | Barley | extracellular, golgi | 46.84 | 93.67 |
| HORVU2Hr1G063710.1 | Barley | extracellular, golgi, mitochondrion, plastid | 88.61 | 73.3 |
| HORVU3Hr1G077290.1 | Barley | extracellular, golgi, mitochondrion, plastid | 85.44 | 71.81 |
| HORVU1Hr1G095120.1 | Barley | extracellular | 14.56 | 69.7 |
| HORVU3Hr1G077280.2 | Barley | mitochondrion | 86.08 | 66.67 |
| HORVU6Hr1G054760.4 | Barley | cytosol | 86.71 | 51.89 |
| HORVU2Hr1G063720.1 | Barley | plastid | 88.61 | 50.91 |
| HORVU4Hr1G007060.2 | Barley | cytosol, plastid | 85.44 | 40.18 |
| TraesCS1A01G429400.1 | Wheat | cytosol, peroxisome, plasma membrane | 87.97 | 40.17 |
| TraesCS1B01G464300.1 | Wheat | cytosol | 87.34 | 39.54 |
| TraesCS1D01G439000.1 | Wheat | cytosol | 87.97 | 39.38 |
| Zm00001d039182_P001 | Maize | extracellular, plasma membrane | 82.28 | 37.46 |
| HORVU5Hr1G029200.4 | Barley | cytosol | 82.91 | 37.32 |
| Os05t0589000-02 | Rice | plasma membrane | 81.65 | 36.75 |
| EES18791 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 81.01 | 36.57 |
| HORVU1Hr1G093720.5 | Barley | plastid | 87.97 | 35.64 |
| HORVU3Hr1G044700.1 | Barley | cytosol | 49.37 | 33.48 |
| HORVU3Hr1G052820.4 | Barley | mitochondrion, peroxisome | 65.82 | 27.44 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 52.53 | 26.18 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 56.33 | 26.18 |
| Bra021462.1-P | Field mustard | cytosol | 55.7 | 25.66 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 55.7 | 25.29 |
| PGSC0003DMT400048302 | Potato | cytosol | 55.7 | 25.29 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 53.8 | 24.57 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 53.16 | 24.21 |
| KRH18270 | Soybean | endoplasmic reticulum | 53.8 | 21.46 |
| Solyc02g089780.2.1 | Tomato | cytosol | 1.9 | 2.48 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G067170.1 | EnsemblPlantsGene:HORVU2Hr1G067170 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TMEM33/Pom33 |
| PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B468176 |
| UniProt:A0A287IA02 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:470252534..470254164
Molecular Weight (calculated)
17867.1 Da
IEP (calculated)
9.138
GRAVY (calculated)
0.503
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPILPKHLA DRACKLSLLG TILSSGYSLY STYGKPRELN MHAIQSWLQS VLGAKDFIHL MFSLLLVTSQ LHLKIAALPV FCRALYHVAR FLRRNFSRSS
101: FYRGYLEEPC LWVETNNTTL SLLSSNAELA LGFLLIISLF SYVDLISLGI VETLFHLS
101: FYRGYLEEPC LWVETNNTTL SLLSSNAELA LGFLLIISLF SYVDLISLGI VETLFHLS
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.