Factsheet for PGSC0003DMT400048302

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074727

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	PGSC0003DMT400074727	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g045090.2.1	Tomato	nucleus, unclear	93.97	94.51
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	80.75	80.98
VIT_14s0083g00300.t01	Wine grape	cytosol	75.29	77.06
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	73.28	73.28
Bra021462.1-P	Field mustard	cytosol	68.97	69.97
GSMUA_Achr8P29730_001	Banana	cytosol	66.95	67.73
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	66.09	64.61
KRG93820	Soybean	cytosol, nucleus, plastid	58.33	64.04
KRH18270	Soybean	endoplasmic reticulum	70.98	62.37
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	62.36	61.3
TraesCS3A01G215100.1	Wheat	cytosol, peroxisome, plastid	61.49	61.14
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	61.21	60.86
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	16.95	60.82
HORVU1Hr1G093680.1	Barley	extracellular, golgi	13.79	60.76
EES03240	Sorghum	cytosol, peroxisome, plastid	61.78	60.73
Os05t0589000-02	Rice	plasma membrane	61.21	60.68
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	60.34	60.0
Zm00001d039182_P001	Maize	extracellular, plasma membrane	59.77	59.94
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	32.47	59.16
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	58.62	58.96
TraesCS1B01G464300.1	Wheat	cytosol	58.33	58.17
TraesCS1D01G439000.1	Wheat	cytosol	58.91	58.07
GSMUA_Achr7P17170_001	Banana	plastid	47.99	57.59
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	61.49	56.46
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	25.29	55.7
HORVU2Hr1G063720.1	Barley	plastid	43.39	54.91
HORVU4Hr1G007060.2	Barley	cytosol, plastid	52.3	54.17
Os01t0641700-01	Rice	plastid	41.09	53.16
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	62.07	53.07
HORVU6Hr1G054760.4	Barley	cytosol	40.23	53.03
HORVU5Hr1G029200.4	Barley	cytosol	53.16	52.71
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	28.45	52.66
HORVU1Hr1G093720.5	Barley	plastid	58.91	52.56
HORVU3Hr1G077280.2	Barley	mitochondrion	29.89	50.98
EES03339	Sorghum	plastid	46.84	48.66
HORVU1Hr1G095120.1	Barley	extracellular	4.6	48.48
TraesCS3A01G230700.1	Wheat	plastid	41.09	47.35
TraesCS3D01G222600.1	Wheat	plastid	41.09	47.35
HORVU3Hr1G044700.1	Barley	cytosol	31.03	46.35
TraesCS3B01G260000.1	Wheat	plasma membrane	41.67	45.74
Zm00001d044089_P002	Maize	plastid	43.1	42.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400048302	EnsemblPlantsGene:PGSC0003DMG400018768	EntrezGene:102582855	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF18	PFAM:PF03661	PGSC:PGSC0003DMG400018768	RefSeq:XP_006346856.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002960386	UniProt:M1BM89	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018768]

Coordinates

chr3:-:10334629..10340005

Molecular Weight (calculated)

39610.2 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.162

Length

348 amino acids

Sequence
(BLAST)

001: MGGGEEDQQK LKNTAAAAYD YENDPRWADY WSNILIPPHM ASRSDVVDHF KRKFYQRYID PGLVVEPMTT SSSSQSARPS AAQPSSSSSS TPSNNQPRQR
101: NSGQASRTSG TSTNPTSNPT SLRWDRKTIQ FSVNAWVFVV AVLSIFPLTP ANLSNRAYRL SFLGTACSSL YSLYSVYGKP RAWNLQAVQV WLQSVIVTKD
201: FISFIYCLTF VTSHLYLKFS LIPVICRSLD HVGKFLRRNF SRSSLYRKYL EEACVWVESN VTTLNILSSQ AEIGLGFLLV VSLLSWQRNI IQTFMYWQIL
301: KLMYHAPATA GYHQSVWAKI GGFVNPVVQR YVPFLNTPIS TIQRWWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.