Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P26350_001 | |
| GSMUA_Achr8P03880_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02420.1 | GSMUA_Achr3P26350_001 | AT5G49540.1 | 21798944 |
| AT3G02420.1 | GSMUA_Achr8P03880_001 | AT5G49540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P25230_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 78.97 | 64.33 |
| GSMUA_Achr8P29730_001 | Banana | cytosol | 75.52 | 63.66 |
| Os01t0641700-01 | Rice | plastid | 49.66 | 53.53 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.69 | 50.57 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 58.28 | 49.71 |
| Bra021462.1-P | Field mustard | cytosol | 57.59 | 48.69 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 57.93 | 48.55 |
| PGSC0003DMT400048302 | Potato | cytosol | 57.59 | 47.99 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 56.55 | 47.26 |
| TraesCS3A01G230700.1 | Wheat | plastid | 47.93 | 46.03 |
| TraesCS3D01G222600.1 | Wheat | plastid | 47.93 | 46.03 |
| TraesCS3B01G260000.1 | Wheat | plasma membrane | 48.28 | 44.16 |
| EES03339 | Sorghum | plastid | 49.66 | 42.99 |
| KRH18270 | Soybean | endoplasmic reticulum | 55.17 | 40.4 |
| Zm00001d044089_P002 | Maize | plastid | 49.31 | 40.06 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 42.41 | 38.8 |
| Solyc02g089780.2.1 | Tomato | cytosol | 14.14 | 33.88 |
| GSMUA_Achr7P17180_001 | Banana | cytosol, mitochondrion, nucleus | 4.14 | 12.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P17170_001 | EnsemblPlants:GSMUA_Achr7T17170_001 | EnsemblPlantsGene:GSMUA_Achr7G17170_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM33/Pom33 | PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002966F30 | UniProt:M0TIA4 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G17170_001]
Coordinates
chr7:-:18798152..18805229
Molecular Weight (calculated)
32522.9 Da
IEP (calculated)
10.584
GRAVY (calculated)
0.017
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTSSSQSS RASDRPSSQS AQSSRASDRL SSQSAAQNVR SQNSGSGSGS TGTAASMGRN ANSSRLYQRS IHFSANAWVL VVVVLGMLPV LPRNLSNRAY
101: HLSLLGTTCS SVYSLYTLYG KPRAWNLPAI QTWFQTLIGA KDFIHLIYCI TLVTSQLHFK FALIPVFSWA LEHVAKFLRR NFAHSSLYRK YLEEPCSWVE
201: ANGTTLNILS SNAEIGLGFL LIISLFSWQR NIIQTFIYWQ LLKLMYHVPV TAGYHQSAWV RIGRTVSPYI YRYASFLNGP ISAVQRWWLT
101: HLSLLGTTCS SVYSLYTLYG KPRAWNLPAI QTWFQTLIGA KDFIHLIYCI TLVTSQLHFK FALIPVFSWA LEHVAKFLRR NFAHSSLYRK YLEEPCSWVE
201: ANGTTLNILS SNAEIGLGFL LIISLFSWQR NIIQTFIYWQ LLKLMYHVPV TAGYHQSAWV RIGRTVSPYI YRYASFLNGP ISAVQRWWLT
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.