Factsheet for GSMUA_Achr1P25230_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P26350_001
GSMUA_Achr8P03880_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	GSMUA_Achr3P26350_001	AT5G49540.1	21798944
AT3G02420.1	GSMUA_Achr8P03880_001	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29730_001	Banana	cytosol	82.02	84.88
GSMUA_Achr7P17170_001	Banana	plastid	64.33	78.97
Solyc02g089780.2.1	Tomato	cytosol	24.16	71.07
PGSC0003DMT400048302	Potato	cytosol	64.61	66.09
VIT_14s0083g00300.t01	Wine grape	cytosol	62.64	65.59
Solyc03g045090.2.1	Tomato	nucleus, unclear	62.64	64.45
Bra021462.1-P	Field mustard	cytosol	62.08	64.43
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	62.92	64.37
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	17.42	63.92
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	61.24	62.82
Os01t0641700-01	Rice	plastid	42.42	56.13
KRG93820	Soybean	cytosol, nucleus, plastid	48.6	54.57
KRH18270	Soybean	endoplasmic reticulum	59.55	53.54
EES03339	Sorghum	plastid	48.88	51.94
TraesCS3A01G230700.1	Wheat	plastid	43.26	50.99
TraesCS3D01G222600.1	Wheat	plastid	43.26	50.99
TraesCS3B01G260000.1	Wheat	plasma membrane	43.82	49.21
Zm00001d044089_P002	Maize	plastid	44.94	44.82

Protein Annotations

EnsemblPlants:GSMUA_Achr1P25230_001	EnsemblPlants:GSMUA_Achr1T25230_001	EnsemblPlantsGene:GSMUA_Achr1G25230_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF41	PFAM:PF03661	SEG:seg	UniParc:UPI000296692A
UniProt:M0S2Y0	MapMan:35.2	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G25230_001]

Coordinates

chr1:-:19634575..19640700

Molecular Weight (calculated)

40448.4 Da

IEP (calculated)

10.127

GRAVY (calculated)

-0.151

Length

356 amino acids

Sequence
(BLAST)

001: MGEEERDPQR LKRIAAAAYD YDNDPRWAEY YSNILIPPHM AARSDVVDHF KRKFYQRFID PDLVVETMSS TSSSQSSRAS DRPSSQPTQS SRASERPSQS
101: TARNVRPQNS GSGSGSTGTA ASVGGNANPL RLDQRSIHFS VNAWVLVVAV LGMLPVASRN LSNKAYRLSL LGTACSSVYS VYSLYGKPRA WNLPAIQTWV
201: QTVVGGKDFI HLIYCITLVT LQLRFKFALI PVFCWALDHV ARFLRCNFAR SSLYRKYMEE PCLWVEAKGT TLNILSSNAE IGMGFLLIIS LFTWQRNIIQ
301: TFIYWQLLKV MYHVPVTAGY HQSAWARIGR TVNPYIYRYA PFLNSPISAV QRWWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.