Factsheet for VIT_14s0083g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089780.2.1	Tomato	cytosol	27.94	78.51
Solyc03g045090.2.1	Tomato	nucleus, unclear	77.35	76.01
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	77.35	75.57
PGSC0003DMT400048302	Potato	cytosol	77.06	75.29
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	76.76	75.22
Bra021462.1-P	Field mustard	cytosol	74.71	74.05
GSMUA_Achr8P29730_001	Banana	cytosol	66.18	65.41
KRG93820	Soybean	cytosol, nucleus, plastid	59.71	64.04
KRH18270	Soybean	endoplasmic reticulum	73.24	62.88
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	65.59	62.64
Os05t0589000-02	Rice	plasma membrane	62.94	60.97
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	62.35	60.57
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	33.82	60.21
EES03240	Sorghum	cytosol, peroxisome, plastid	62.35	59.89
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	62.35	59.89
TraesCS3A01G215100.1	Wheat	cytosol, peroxisome, plastid	60.88	59.14
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	60.0	58.96
Zm00001d039182_P001	Maize	extracellular, plasma membrane	60.0	58.79
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	16.76	58.76
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	60.29	58.57
GSMUA_Achr7P17170_001	Banana	plastid	49.71	58.28
TraesCS1B01G464300.1	Wheat	cytosol	59.41	57.88
HORVU1Hr1G093680.1	Barley	extracellular, golgi	13.24	56.96
TraesCS1D01G439000.1	Wheat	cytosol	59.12	56.94
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	26.18	56.33
HORVU4Hr1G007060.2	Barley	cytosol, plastid	55.0	55.65
HORVU2Hr1G063720.1	Barley	plastid	44.71	55.27
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	60.88	54.62
HORVU6Hr1G054760.4	Barley	cytosol	41.18	53.03
HORVU5Hr1G029200.4	Barley	cytosol	54.71	52.99
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	63.24	52.83
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	28.82	52.13
HORVU1Hr1G093720.5	Barley	plastid	59.71	52.05
Os01t0641700-01	Rice	plastid	41.18	52.04
EES03339	Sorghum	plastid	50.0	50.75
HORVU3Hr1G077280.2	Barley	mitochondrion	30.29	50.49
HORVU1Hr1G095120.1	Barley	extracellular	4.71	48.48
TraesCS3A01G230700.1	Wheat	plastid	41.18	46.36
TraesCS3D01G222600.1	Wheat	plastid	41.18	46.36
HORVU3Hr1G044700.1	Barley	cytosol	30.88	45.06
TraesCS3B01G260000.1	Wheat	plasma membrane	41.76	44.8
Zm00001d044089_P002	Maize	plastid	46.47	44.26

Protein Annotations

EntrezGene:100256561	wikigene:100256561	MapMan:35.2	ProteinID:CBI16869	ProteinID:CBI16869.3	UniProt:D7SMH1
EMBL:FN594955	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0009506	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100256561	wikigene:LOC100256561	PFAM:PF03661
PANTHER:PTHR30603	PANTHER:PTHR30603:SF18	TIGR:TC58478	InterPro:TMEM33/Pom33	TMHMM:TMhelix	UniParc:UPI00015C82C4
ArrayExpress:VIT_14s0083g00300	EnsemblPlantsGene:VIT_14s0083g00300	EnsemblPlants:VIT_14s0083g00300.t01	unigene:Vvi.1642	RefSeq:XP_002283034	RefSeq:XP_002283034.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:22341131..22350280

Molecular Weight (calculated)

39193.1 Da

IEP (calculated)

10.044

GRAVY (calculated)

-0.094

Length

340 amino acids

Sequence
(BLAST)

001: MADREEDPQR LKKIAAAAYD YENDPRWADY WSNILIPPHM ASRSDVREHF KRKFYQRYID PELVVEAMSM GSSSSSSSSA ASEQPRARNS GSATRTSGAS
101: ATSGPTPTPA PTSMRWDRQT IQFSVNAWVF VVAVLAIFPI IPQNLSNRAY RLSFMGTACS SLYSLYSLYG KPRAWNLQAV QVWFQSVIAT KDFLYFIYCL
201: MFVTSHLYLK FALIPILCRA VEHVAKFLRR NFTRSSLYRK YLEEPCVWVE SNATTLSILS SHTEIGLGFL LILSLLSWQR NIIQTFMYWQ LLKLMYHAPV
301: TASYHQSVWS KIGRTINPLV HRYAPFLNTP ISAIQRWWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.