Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- golgi 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G084220.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02420.1 | HORVU1Hr1G084220.5 | AT5G49540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G067170.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 93.67 | 46.84 |
| HORVU2Hr1G063710.1 | Barley | extracellular, golgi, mitochondrion, plastid | 96.2 | 39.79 |
| HORVU3Hr1G077290.1 | Barley | extracellular, golgi, mitochondrion, plastid | 93.67 | 39.36 |
| HORVU3Hr1G077280.2 | Barley | mitochondrion | 93.67 | 36.27 |
| HORVU6Hr1G054760.4 | Barley | cytosol | 96.2 | 28.79 |
| HORVU2Hr1G063720.1 | Barley | plastid | 96.2 | 27.64 |
| HORVU3Hr1G044700.1 | Barley | cytosol | 69.62 | 23.61 |
| TraesCS1A01G429400.1 | Wheat | cytosol, peroxisome, plasma membrane | 97.47 | 22.25 |
| HORVU4Hr1G007060.2 | Barley | cytosol, plastid | 93.67 | 22.02 |
| TraesCS1D01G439000.1 | Wheat | cytosol | 97.47 | 21.81 |
| TraesCS1B01G464300.1 | Wheat | cytosol | 96.2 | 21.78 |
| HORVU5Hr1G029200.4 | Barley | cytosol | 91.14 | 20.51 |
| HORVU1Hr1G093720.5 | Barley | plastid | 98.73 | 20.0 |
| Os05t0589000-02 | Rice | plasma membrane | 87.34 | 19.66 |
| Zm00001d039182_P001 | Maize | extracellular, plasma membrane | 86.08 | 19.6 |
| EES18791 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 84.81 | 19.14 |
| HORVU3Hr1G052820.4 | Barley | mitochondrion, peroxisome | 70.89 | 14.78 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 55.7 | 13.88 |
| PGSC0003DMT400048302 | Potato | cytosol | 60.76 | 13.79 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 56.96 | 13.24 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 56.96 | 13.01 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 56.96 | 12.97 |
| Bra021462.1-P | Field mustard | cytosol | 54.43 | 12.54 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 54.43 | 12.36 |
| KRH18270 | Soybean | endoplasmic reticulum | 54.43 | 10.86 |
| Solyc02g089780.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| HORVU1Hr1G095120.1 | Barley | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G093680.1 | EnsemblPlantsGene:HORVU1Hr1G093680 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR30603 |
| PANTHER:PTHR30603:SF41 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B47C32F | UniProt:A0A287GSL8 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr1H:+:553762935..553763402
Molecular Weight (calculated)
9177.3 Da
IEP (calculated)
10.688
GRAVY (calculated)
0.154
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: KGYSLYSTYG KPRELNMPAI QGWLQSVLGA KDFIHLMFSL LLVTSQLHLK IAALPVFCWA LDHVARFLRR NFSRSSFYR
001: MSTSSSSSQS ARPTATSASS TASSNANEQV RSRNSGSVPR TSGPSATTGA TPSSMRWDEQ TIQFSVNAWV FVIAVLAVLP LIPKNLSNRA YRLSFMGTAC
101: SSLYSLYSLY GRPRAWNMQG LQVYFQSIVA AKDFIYFIYC LTFVTSHLCL KFALIPILCR ALEQVAKFLR RNFGRSTIYR KYLEDPCVWV ESNTTTLNIL
201: SSQAEIAIGF LLIISLLSWQ RNIIQTFMYW QLLKLMYQAP VTAGYHQSTW SRIGRTVTPI IQRYAPFLNT PVSAVQRWWF R
101: SSLYSLYSLY GRPRAWNMQG LQVYFQSIVA AKDFIYFIYC LTFVTSHLCL KFALIPILCR ALEQVAKFLR RNFGRSTIYR KYLEDPCVWV ESNTTTLNIL
201: SSQAEIAIGF LLIISLLSWQ RNIIQTFMYW QLLKLMYQAP VTAGYHQSTW SRIGRTVTPI IQRYAPFLNT PVSAVQRWWF R
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.