Factsheet for Bra021462.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1
extracellular 1
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005951.1-P
Bra010030.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	Bra005951.1-P	AT5G07730.1	21798944
AT3G02420.1	Bra010030.1-P	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	87.46	86.21
VIT_14s0083g00300.t01	Wine grape	cytosol	74.05	74.71
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	69.97	69.16
Solyc03g045090.2.1	Tomato	nucleus, unclear	69.68	69.08
PGSC0003DMT400048302	Potato	cytosol	69.97	68.97
Solyc02g089780.2.1	Tomato	cytosol	24.2	68.59
GSMUA_Achr8P29730_001	Banana	cytosol	66.18	65.99
KRG93820	Soybean	cytosol, nucleus, plastid	58.89	63.72
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	64.43	62.08
KRH18270	Soybean	endoplasmic reticulum	70.55	61.11
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	33.82	60.73
EES03240	Sorghum	cytosol, peroxisome, plastid	60.64	58.76
Os05t0589000-02	Rice	plasma membrane	60.06	58.69
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	60.35	58.47
GSMUA_Achr7P17170_001	Banana	plastid	48.69	57.59
TraesCS3A01G215100.1	Wheat	cytosol, peroxisome, plastid	58.6	57.43
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	58.31	57.14
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	57.43	56.94
TraesCS1D01G439000.1	Wheat	cytosol	58.31	56.66
TraesCS1B01G464300.1	Wheat	cytosol	57.43	56.45
Zm00001d039182_P001	Maize	extracellular, plasma membrane	56.56	55.91
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	25.66	55.7
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	56.56	55.43
HORVU2Hr1G063720.1	Barley	plastid	44.31	55.27
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	15.45	54.64
HORVU1Hr1G093680.1	Barley	extracellular, golgi	12.54	54.43
Os01t0641700-01	Rice	plastid	41.69	53.16
HORVU4Hr1G007060.2	Barley	cytosol, plastid	51.9	52.98
HORVU5Hr1G029200.4	Barley	cytosol	53.94	52.71
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	58.02	52.51
HORVU6Hr1G054760.4	Barley	cytosol	40.23	52.27
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	28.28	51.6
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	60.93	51.35
HORVU1Hr1G093720.5	Barley	plastid	58.02	51.03
HORVU3Hr1G077280.2	Barley	mitochondrion	29.45	49.51
HORVU1Hr1G095120.1	Barley	extracellular	4.66	48.48
EES03339	Sorghum	plastid	46.36	47.46
TraesCS3A01G230700.1	Wheat	plastid	40.82	46.36
TraesCS3D01G222600.1	Wheat	plastid	40.82	46.36
TraesCS3B01G260000.1	Wheat	plasma membrane	41.4	44.8
HORVU3Hr1G044700.1	Barley	cytosol	29.45	43.35
Zm00001d044089_P002	Maize	plastid	44.02	42.3

Protein Annotations

EnsemblPlants:Bra021462.1	EnsemblPlants:Bra021462.1-P	EnsemblPlantsGene:Bra021462	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0009506	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF18	PFAM:PF03661	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002544910
UniProt:M4DY66	MapMan:35.2	:	:	:	:

Description

AT3G02420 (E=4e-167) | unknown protein

Coordinates

chrA01:-:25123804..25126216

Molecular Weight (calculated)

39250.1 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.136

Length

343 amino acids

Sequence
(BLAST)

001: MAEGGEDPQR LKKIAAAAYD YDNDSRWTDY WSNILIPPHM ASHAEVVEHY KRKFYQRYMD PDLVVEPMSS TSSSQSARPS ASTTNANEQQ ARSRSSGSVP
101: RTAGPSATTG AANPSSVRWD QQTIQFSVNA WVFVIAVLAV LPLVPKNLSN RAYRLSFMGT ACSSLYSLYA LYGRPRAWNM QGMQVYFQSI VGAKDFIYFI
201: YCLTFVTSNL CLKFALIPIL CRALEQVAKF LRRNFTRSTI YRKYLEDPCV WVESNTTTLN ILSSQAEIAI GFLLIISLLS WQRNFIQTFM YWQLLKLMYQ
301: APVTAGYHQS NWSKIGRTVN PMIQRYAPFL NTPVTAVQRW WFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.