Factsheet for TraesCS3D01G222600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
golgi 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, golgi, plastid
ChloroP:	plastid
MultiLoc:	golgi
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G381200.1
TraesCS1B01G403700.1
TraesCS1D01G389000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	TraesCS1A01G381200.1	AT5G49540.1	21798944
AT3G02420.1	TraesCS1B01G403700.1	AT5G49540.1	21798944
AT3G02420.1	TraesCS1D01G389000.1	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G230700.1	Wheat	plastid	99.01	99.01
TraesCS3B01G260000.1	Wheat	plasma membrane	92.72	88.33
Os01t0641700-01	Rice	plastid	74.17	83.27
EES03339	Sorghum	plastid	75.5	68.06
Zm00001d044089_P002	Maize	plastid	74.17	62.75
GSMUA_Achr7P17170_001	Banana	plastid	46.03	47.93
GSMUA_Achr8P29730_001	Banana	cytosol	51.99	45.64
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	50.99	43.26
VIT_14s0083g00300.t01	Wine grape	cytosol	46.36	41.18
PGSC0003DMT400048302	Potato	cytosol	47.35	41.09
Bra021462.1-P	Field mustard	cytosol	46.36	40.82
Solyc03g045090.2.1	Tomato	nucleus, unclear	46.69	40.75
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	46.69	40.63
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	45.7	39.66
TraesCS1D01G439000.1	Wheat	cytosol	45.03	38.53
KRH18270	Soybean	endoplasmic reticulum	45.03	34.34
KRG93820	Soybean	cytosol, nucleus, plastid	35.43	33.75
Solyc02g089780.2.1	Tomato	cytosol	12.25	30.58

Protein Annotations

EnsemblPlants:TraesCS3D01G222600.1	EnsemblPlantsGene:TraesCS3D01G222600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF20	PFAM:PF03661	SEG:seg	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr3D:+:303577234..303583003

Molecular Weight (calculated)

33926.2 Da

IEP (calculated)

9.364

GRAVY (calculated)

0.134

Length

302 amino acids

Sequence
(BLAST)

001: MSSFSAGFQL VAKQCCEDSP PSSPQGPDFV VRGMSSASSS QFPASTERES TTANDNAIPH DPGADSAGPA QSRLSLQLDQ RSLHFSVNAW VLIVALIGII
101: PLATRQLQLK GYRLSLLGTT CTTGYAIFAL YGLPRVGNTQ AVQAWCHHVT SSKDFIPFMY CLMFVTSKLH LKLVLVPVIC WALEHVARFL RRHFTNSSLY
201: RAYLEPLCTW VEANTTAVNF LIANAEILLG FLMILSLFSK QRNAMQTFMY WQLLKLMYHS PFTAGYHRAI WLKIGRTANP YISSYTPFLH DPINAGMRWW
301: FR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.