Factsheet for PGSC0003DMT400026189

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074727

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	PGSC0003DMT400074727	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089780.2.1	Tomato	cytosol	32.85	94.21
PGSC0003DMT400048302	Potato	cytosol	80.98	80.75
VIT_14s0083g00300.t01	Wine grape	cytosol	75.22	76.76
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	73.78	73.56
Bra021462.1-P	Field mustard	cytosol	69.16	69.97
GSMUA_Achr8P29730_001	Banana	cytosol	64.27	64.83
KRG93820	Soybean	cytosol, nucleus, plastid	58.5	64.04
KRH18270	Soybean	endoplasmic reticulum	72.33	63.38
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	62.82	61.24
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	60.81	59.6
TraesCS3A01G215100.1	Wheat	cytosol, peroxisome, plastid	59.94	59.43
EES03240	Sorghum	cytosol, peroxisome, plastid	60.23	59.04
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	59.37	58.86
Zm00001d039182_P001	Maize	extracellular, plasma membrane	57.93	57.93
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	16.14	57.73
Os05t0589000-02	Rice	plasma membrane	57.93	57.27
HORVU1Hr1G093680.1	Barley	extracellular, golgi	12.97	56.96
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	56.48	56.65
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	57.06	56.57
GSMUA_Achr7P17170_001	Banana	plastid	47.26	56.55
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	31.12	56.54
TraesCS1B01G464300.1	Wheat	cytosol	56.77	56.45
TraesCS1D01G439000.1	Wheat	cytosol	56.77	55.81
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	59.37	54.35
HORVU2Hr1G063720.1	Barley	plastid	42.36	53.45
HORVU4Hr1G007060.2	Barley	cytosol, plastid	51.59	53.27
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	24.21	53.16
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	61.1	52.09
HORVU6Hr1G054760.4	Barley	cytosol	39.48	51.89
Os01t0641700-01	Rice	plastid	39.77	51.3
HORVU5Hr1G029200.4	Barley	cytosol	51.3	50.71
HORVU1Hr1G093720.5	Barley	plastid	56.77	50.51
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	26.51	48.94
EES03339	Sorghum	plastid	46.4	48.06
HORVU3Hr1G077280.2	Barley	mitochondrion	27.95	47.55
TraesCS3A01G230700.1	Wheat	plastid	40.63	46.69
TraesCS3D01G222600.1	Wheat	plastid	40.63	46.69
HORVU1Hr1G095120.1	Barley	extracellular	4.32	45.45
HORVU3Hr1G044700.1	Barley	cytosol	30.26	45.06
TraesCS3B01G260000.1	Wheat	plasma membrane	40.92	44.8
Zm00001d044089_P002	Maize	plastid	42.36	41.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400026189	EnsemblPlantsGene:PGSC0003DMG400010091	EntrezGene:102584544	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF18	PFAM:PF03661	PGSC:PGSC0003DMG400010091	RefSeq:XP_006338283.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000294C7E2	UniProt:M1AMT6	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010091]

Coordinates

chr2:-:44938840..44943524

Molecular Weight (calculated)

39383.2 Da

IEP (calculated)

10.040

GRAVY (calculated)

-0.105

Length

347 amino acids

Sequence
(BLAST)

001: MGEEAEDPQK LKKIAAAAYD YENDPRWADY WSNILIPPHM GSRSDVVDHF KRKFYHRYID PGLVVEPMTT SSSSQSARSS APQSSSSSTS NNQPRQRNSG
101: AANRTSGTSP TPTPTSSATS LRWNRQTIQF SVNAWVLVVA VLAIFPLIPT NLSNRAYRLA FAGTACSSLY SLYALYGKPS AWNLQALQVW LQSVIMAKDF
201: LYFIYCLTFV TSHLSLKFAL IPVICRGLEH VAKFLRRNFN TSSLYRKFLE EACVWVESNT TTLSILSSQA EIGLGLLLVV SLFSWQRNIL QTFMYWQLLK
301: LMYHAPATAG YHQSMWATIG RHVNPLVQRY APFMHTPISS IQRWWLR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.