Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G095120.1 | Barley | extracellular | 8.83 | 93.94 |
| HORVU1Hr1G093680.1 | Barley | extracellular, golgi | 19.66 | 87.34 |
| EES18791 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 85.47 | 85.71 |
| Zm00001d039182_P001 | Maize | extracellular, plasma membrane | 84.62 | 85.59 |
| HORVU2Hr1G063710.1 | Barley | extracellular, golgi, mitochondrion, plastid | 46.15 | 84.82 |
| HORVU2Hr1G063720.1 | Barley | plastid | 65.24 | 83.27 |
| TraesCS1A01G429400.1 | Wheat | cytosol, peroxisome, plasma membrane | 81.77 | 82.95 |
| HORVU2Hr1G067170.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 36.75 | 81.65 |
| TraesCS1B01G464300.1 | Wheat | cytosol | 80.34 | 80.8 |
| HORVU6Hr1G054760.4 | Barley | cytosol | 60.11 | 79.92 |
| TraesCS1D01G439000.1 | Wheat | cytosol | 80.34 | 79.89 |
| HORVU4Hr1G007060.2 | Barley | cytosol, plastid | 74.36 | 77.68 |
| HORVU1Hr1G093720.5 | Barley | plastid | 82.34 | 74.1 |
| HORVU5Hr1G029200.4 | Barley | cytosol | 73.79 | 73.79 |
| Os01t0604700-01 | Rice | cytosol, peroxisome, plastid | 74.07 | 73.45 |
| HORVU3Hr1G077290.1 | Barley | extracellular, golgi, mitochondrion, plastid | 39.03 | 72.87 |
| HORVU3Hr1G044700.1 | Barley | cytosol | 47.01 | 70.82 |
| HORVU3Hr1G077280.2 | Barley | mitochondrion | 41.03 | 70.59 |
| Solyc02g089780.2.1 | Tomato | cytosol | 22.79 | 66.12 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 60.97 | 62.94 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 60.68 | 61.56 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.68 | 61.21 |
| PGSC0003DMT400048302 | Potato | cytosol | 60.68 | 61.21 |
| Bra021462.1-P | Field mustard | cytosol | 58.69 | 60.06 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 57.27 | 57.93 |
| Os01t0641700-01 | Rice | plastid | 43.02 | 56.13 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 46.15 | 51.1 |
| KRH18270 | Soybean | endoplasmic reticulum | 56.98 | 50.51 |
Protein Annotations
| EMBL:AK061980 | EMBL:AK099181 | EnsemblPlants:Os05t0589000-02 | EnsemblPlantsGene:Os05g0589000 | EntrezGene:4339776 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:TMEM33/Pom33 | PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 |
| ProteinID:BAS95608.1 | RefSeq:XP_015639448.1 | SEG:seg | UniParc:UPI0000E1261A | UniProt:B7E741 | MapMan:35.2 |
Description
Uncharacterised protein family UPF0121 domain containing protein. (Os05t0589000-01);Uncharacterised protein family UPF0121 domain containing protein. (Os05t0589000-02)
Coordinates
chr5:+:29336135..29340355
Molecular Weight (calculated)
39515.3 Da
IEP (calculated)
9.882
GRAVY (calculated)
-0.130
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGDASGGD GPEQELKRAA AAAYNYEGDA RWAEYWSNIL VPPHLASRPD VVDHYKRKFY QRYIDRDLVV EPMSSTGSTQ PSGPEVRSSS FSSSENVRAR
101: SSGSSSRSAA PPPPPPQTDS ATNPLRFDAR TIHFSINAWV LVVAGLGMLP ILPKHLADRA CKLSLLGTIL SSAYSLYSTY GKPRAWNMPA VQGWLQAVLG
201: TKDFIHLMFS LMLFTSQLHL KIAALPVFCW ALDHVARFLR RNFARSSFYR SYLEEPCLWV ETNNTTLSLL SSNAEIALGF LLIISLFSWQ RSIIQTFMYW
301: QVLKQMYHAP VTASYHQSAW AKIGRIVNPY IHRYAPFLNT PISAAQRWWF R
101: SSGSSSRSAA PPPPPPQTDS ATNPLRFDAR TIHFSINAWV LVVAGLGMLP ILPKHLADRA CKLSLLGTIL SSAYSLYSTY GKPRAWNMPA VQGWLQAVLG
201: TKDFIHLMFS LMLFTSQLHL KIAALPVFCW ALDHVARFLR RNFARSSFYR SYLEEPCLWV ETNNTTLSLL SSNAEIALGF LLIISLFSWQ RSIIQTFMYW
301: QVLKQMYHAP VTASYHQSAW AKIGRIVNPY IHRYAPFLNT PISAAQRWWF R
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.