Factsheet for HORVU6Hr1G054760.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G084220.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	HORVU1Hr1G084220.5	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G093680.1	Barley	extracellular, golgi	28.79	96.2
HORVU1Hr1G095120.1	Barley	extracellular	11.36	90.91
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	51.89	86.71
HORVU2Hr1G063720.1	Barley	plastid	90.15	86.55
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	61.36	84.82
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	54.17	76.06
HORVU3Hr1G077280.2	Barley	mitochondrion	56.82	73.53
HORVU4Hr1G007060.2	Barley	cytosol, plastid	89.02	69.94
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	90.15	68.79
TraesCS1B01G464300.1	Wheat	cytosol	89.39	67.62
HORVU3Hr1G044700.1	Barley	cytosol	59.09	66.95
TraesCS1D01G439000.1	Wheat	cytosol	89.39	66.86
HORVU5Hr1G029200.4	Barley	cytosol	86.36	64.96
HORVU1Hr1G093720.5	Barley	plastid	91.67	62.05
Os05t0589000-02	Rice	plasma membrane	79.92	60.11
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	78.79	59.43
Zm00001d039182_P001	Maize	extracellular, plasma membrane	76.14	57.93
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	62.88	43.8
VIT_14s0083g00300.t01	Wine grape	cytosol	53.03	41.18
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	53.41	40.52
Bra021462.1-P	Field mustard	cytosol	52.27	40.23
PGSC0003DMT400048302	Potato	cytosol	53.03	40.23
Solyc03g045090.2.1	Tomato	nucleus, unclear	52.65	40.17
KRG93820	Soybean	cytosol, nucleus, plastid	47.73	39.75
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	51.89	39.48
KRH18270	Soybean	endoplasmic reticulum	51.89	34.6
Solyc02g089780.2.1	Tomato	cytosol	7.2	15.7

Protein Annotations

EnsemblPlants:HORVU6Hr1G054760.4	EnsemblPlantsGene:HORVU6Hr1G054760	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF41	PFAM:PF03661	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B464D73
UniProt:A0A287U895	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:347753659..347755999

Molecular Weight (calculated)

29511.7 Da

IEP (calculated)

10.226

GRAVY (calculated)

0.061

Length

264 amino acids

Sequence
(BLAST)

001: LRFMNRNSYS VEFDRDLVVE PMSTTGSIQP SRPDIRSSPS ASSENVRARN SGSSSRSAAS PPAAPQAGAA NPLRFDARTI HFSVNAWVLV VAGVGMLPML
101: PKHLADRACK LSLLGTVLSS GYSLYSTYGK PRELNMPAIQ SWLQSVLGAK DFIHLMFSLL LVTSQLHLKI AALPVFCWAL YHVARFLRRN FSRSSFYRGY
201: LEEPCLWVDT NNTTLSLLSS NAELPLGFLL IISLFSWQRN FMQTFMYSNV LKVMYRAPVT SSYH

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.