Factsheet for HORVU4Hr1G007060.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G084220.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	HORVU1Hr1G084220.5	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G095120.1	Barley	extracellular	9.52	96.97
HORVU1Hr1G093680.1	Barley	extracellular, golgi	22.02	93.67
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	52.98	93.19
HORVU2Hr1G063720.1	Barley	plastid	76.19	93.09
HORVU6Hr1G054760.4	Barley	cytosol	69.94	89.02
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	88.39	85.84
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	40.18	85.44
TraesCS1B01G464300.1	Wheat	cytosol	88.69	85.39
TraesCS1D01G439000.1	Wheat	cytosol	87.8	83.57
HORVU3Hr1G044700.1	Barley	cytosol	57.14	82.4
HORVU5Hr1G029200.4	Barley	cytosol	83.93	80.34
HORVU1Hr1G093720.5	Barley	plastid	90.18	77.69
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	43.45	77.66
HORVU3Hr1G077280.2	Barley	mitochondrion	45.54	75.0
Os05t0589000-02	Rice	plasma membrane	77.68	74.36
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	76.19	73.14
Zm00001d039182_P001	Maize	extracellular, plasma membrane	74.4	72.05
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	62.5	55.41
VIT_14s0083g00300.t01	Wine grape	cytosol	55.65	55.0
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	54.46	52.59
PGSC0003DMT400048302	Potato	cytosol	54.17	52.3
Solyc03g045090.2.1	Tomato	nucleus, unclear	53.57	52.02
Bra021462.1-P	Field mustard	cytosol	52.98	51.9
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	53.27	51.59
KRG93820	Soybean	cytosol, nucleus, plastid	46.73	49.53
Solyc02g089780.2.1	Tomato	cytosol	16.96	47.11
KRH18270	Soybean	endoplasmic reticulum	53.27	45.2

Protein Annotations

EnsemblPlants:HORVU4Hr1G007060.2	EnsemblPlantsGene:HORVU4Hr1G007060	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF41	PFAM:PF03661	SEG:seg	UniParc:UPI000B4762C8	UniProt:A0A287N2N0
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:18077344..18080851

Molecular Weight (calculated)

37812.8 Da

IEP (calculated)

10.015

GRAVY (calculated)

0.047

Length

336 amino acids

Sequence
(BLAST)

001: RRSSPAPASV AMTEAKRPAA AAYDYEADPC WADYWSNVLV PPHLLARPDV LVHFRRKFYH RFIDRDLVVE PMSTTGSTQP SRPDIRSSPS ASSENVRARN
101: SGSSSRSAAP PPTAPQAGAA NPLRFDAQTI HFSVNAWVLV VAGLGMLPIL PKHLADRACK LSLLGTVLSS GYCLYSTYGK PRELNMPAIQ SWLQSVLGVK
201: DFIHLMFALL LVTSQLHLKI AALPVFCWAL DHVARFLRRN FSRSSFYRGY LEEPCLWVET NNITLSLLSS NAEVALGFLL IISLFSWRRN FIQTFMYWTV
301: LKMMYRAPVT SSYHHSAWAK IMRTLNPYID RFCGIL

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.