Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G381200.1 | |
| TraesCS1B01G403700.1 | |
| TraesCS1D01G389000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02420.1 | TraesCS1A01G381200.1 | AT5G49540.1 | 21798944 |
| AT3G02420.1 | TraesCS1B01G403700.1 | AT5G49540.1 | 21798944 |
| AT3G02420.1 | TraesCS1D01G389000.1 | AT5G49540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G093680.1 | Barley | extracellular, golgi | 21.81 | 97.47 |
| HORVU1Hr1G095120.1 | Barley | extracellular | 9.07 | 96.97 |
| TraesCS1A01G429400.1 | Wheat | cytosol, peroxisome, plasma membrane | 94.62 | 96.53 |
| TraesCS1B01G464300.1 | Wheat | cytosol | 94.33 | 95.42 |
| HORVU2Hr1G063710.1 | Barley | extracellular, golgi, mitochondrion, plastid | 51.56 | 95.29 |
| HORVU2Hr1G063720.1 | Barley | plastid | 73.09 | 93.82 |
| HORVU6Hr1G054760.4 | Barley | cytosol | 66.86 | 89.39 |
| HORVU2Hr1G067170.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 39.38 | 87.97 |
| HORVU4Hr1G007060.2 | Barley | cytosol, plastid | 83.57 | 87.8 |
| HORVU1Hr1G093720.5 | Barley | plastid | 94.33 | 85.38 |
| HORVU5Hr1G029200.4 | Barley | cytosol | 83.57 | 84.05 |
| HORVU3Hr1G044700.1 | Barley | cytosol | 54.96 | 83.26 |
| Os05t0589000-02 | Rice | plasma membrane | 79.89 | 80.34 |
| EES18791 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 79.6 | 80.29 |
| Zm00001d039182_P001 | Maize | extracellular, plasma membrane | 78.47 | 79.83 |
| HORVU3Hr1G077290.1 | Barley | extracellular, golgi, mitochondrion, plastid | 42.49 | 79.79 |
| HORVU3Hr1G077280.2 | Barley | mitochondrion | 45.04 | 77.94 |
| Solyc02g089780.2.1 | Tomato | cytosol | 20.96 | 61.16 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 58.36 | 59.2 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 56.94 | 59.12 |
| PGSC0003DMT400048302 | Potato | cytosol | 58.07 | 58.91 |
| Bra021462.1-P | Field mustard | cytosol | 56.66 | 58.31 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 56.94 | 58.09 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 55.81 | 56.77 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 45.33 | 50.47 |
| KRH18270 | Soybean | endoplasmic reticulum | 55.81 | 49.75 |
| TraesCS3D01G222600.1 | Wheat | plastid | 38.53 | 45.03 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G439000.1 | EnsemblPlantsGene:TraesCS1D01G439000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TMEM33/Pom33 |
| PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1D:-:485506604..485510177
Molecular Weight (calculated)
39423.4 Da
IEP (calculated)
10.128
GRAVY (calculated)
-0.064
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGDAGPEA AAEQGGQEAK RAAAAAYDYE ADPRWADYWS NVLVPPHLAA RPDVVAHFRR KFYQRFIDRD LVVEPMSTTG STQPSRPDIR SSPSASTESV
101: RARNSGSSSR SAAPPPAAPQ AGAASPLRFD AKTIHFSVNA WVLVVAGLGM LPILPKHLAD RACKLSLLGT VLSSGYSLYS TYGKPRELNM AAIQGWLQSV
201: LGAKDFIHLM FSLLLVTSQL HLKIAALPVF CWALDHVARF LRRNFSRSSF YRGYLEEPCL WVETNNTTLS LLSSNAELAL GFLLIISLFS WRRNFIQTFM
301: YWNVLKMMYR APVTSSYHQS AWAKIGRTVN PYIDRYAPFL QTPISMVQRW WLR
101: RARNSGSSSR SAAPPPAAPQ AGAASPLRFD AKTIHFSVNA WVLVVAGLGM LPILPKHLAD RACKLSLLGT VLSSGYSLYS TYGKPRELNM AAIQGWLQSV
201: LGAKDFIHLM FSLLLVTSQL HLKIAALPVF CWALDHVARF LRRNFSRSSF YRGYLEEPCL WVETNNTTLS LLSSNAELAL GFLLIISLFS WRRNFIQTFM
301: YWNVLKMMYR APVTSSYHQS AWAKIGRTVN PYIDRYAPFL QTPISMVQRW WLR
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [cytosol,endoplasmic reticulum,peroxisome]
SUBAcon: [cytosol,endoplasmic reticulum,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.