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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • extracellular 1
  • mitochondrion 2
  • plastid 1
  • plasma membrane 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, unclear
Any Predictor:cytosol, endoplasmic reticulum, extracellular, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:extracellular, mitochondrion, nucleus, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
 unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058280.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02420.1 Solyc01g058280.2.1 AT5G49540.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400048302 Potato cytosol 94.51 93.97
Solyc02g089780.2.1 Tomato cytosol 27.75 79.34
VIT_14s0083g00300.t01 Wine grape cytosol 76.01 77.35
AT3G02420.1 Thale cress cytosol, endoplasmic reticulum, peroxisome 73.99 73.56
Bra021462.1-P Field mustard cytosol 69.08 69.68
GSMUA_Achr8P29730_001 Banana cytosol 65.61 65.99
KRG93820 Soybean cytosol, nucleus, plastid 59.25 64.67
KRH18270 Soybean endoplasmic reticulum 72.25 63.13
GSMUA_Achr1P25230_001 Banana cytosol, endoplasmic reticulum, peroxisome 64.45 62.64
GSMUA_Achr7P17180_001 Banana cytosol, mitochondrion, nucleus 17.34 61.86
Os05t0589000-02 Rice plasma membrane 61.56 60.68
Os01t0604700-01 Rice cytosol, peroxisome, plastid 61.85 60.45
EES18791 Sorghum cytosol, endoplasmic reticulum, peroxisome 60.69 60.0
Zm00001d039182_P001 Maize extracellular, plasma membrane 59.54 59.37
EES03240 Sorghum cytosol, peroxisome, plastid 60.69 59.32
TraesCS3A01G215100.1 Wheat cytosol, peroxisome, plastid 59.83 59.14
TraesCS3B01G246200.2 Wheat cytosol, peroxisome, plastid 59.54 58.86
GSMUA_Achr7P17170_001 Banana plastid 48.55 57.93
TraesCS1A01G429400.1 Wheat cytosol, peroxisome, plasma membrane 57.8 57.8
HORVU2Hr1G063710.1 Barley extracellular, golgi, mitochondrion, plastid 31.79 57.59
TraesCS1B01G464300.1 Wheat cytosol 57.8 57.31
HORVU1Hr1G093680.1 Barley extracellular, golgi 13.01 56.96
TraesCS1D01G439000.1 Wheat cytosol 58.09 56.94
HORVU3Hr1G052820.4 Barley mitochondrion, peroxisome 59.83 54.62
HORVU2Hr1G063720.1 Barley plastid 43.06 54.18
HORVU2Hr1G067170.1 Barley golgi, mitochondrion, plasma membrane, plastid 24.57 53.8
HORVU4Hr1G007060.2 Barley cytosol, plastid 52.02 53.57
Os01t0641700-01 Rice plastid 41.04 52.79
HORVU6Hr1G054760.4 Barley cytosol 40.17 52.65
HORVU5Hr1G029200.4 Barley cytosol 52.89 52.14
Zm00001d044412_P001 Maize cytosol, nucleus, peroxisome 60.98 51.84
HORVU1Hr1G093720.5 Barley plastid 58.38 51.79
HORVU3Hr1G077290.1 Barley extracellular, golgi, mitochondrion, plastid 27.75 51.06
HORVU3Hr1G077280.2 Barley mitochondrion 29.19 49.51
HORVU1Hr1G095120.1 Barley extracellular 4.62 48.48
EES03339 Sorghum plastid 46.82 48.36
TraesCS3A01G230700.1 Wheat plastid 40.75 46.69
TraesCS3D01G222600.1 Wheat plastid 40.75 46.69
HORVU3Hr1G044700.1 Barley cytosol 31.21 46.35
TraesCS3B01G260000.1 Wheat plasma membrane 41.33 45.11
Zm00001d044089_P002 Maize plastid 43.06 41.74
Protein Annotations
EnsemblPlants:Solyc03g045090.2.1EnsemblPlantsGene:Solyc03g045090.2GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:TMEM33/Pom33
PANTHER:PTHR30603PANTHER:PTHR30603:SF18PFAM:PF03661SEG:segTMHMM:TMhelixUniParc:UPI0002768560
UniProt:K4BGC0MapMan:35.2::::
Description
No Description!
Coordinates
chr3:-:11509718..11514451
Molecular Weight (calculated)
39305.9 Da
IEP (calculated)
10.104
GRAVY (calculated)
-0.152
Length
346 amino acids
Sequence
(BLAST)
001: MGGGEEDQQK LKNTAAAAYD YENDPRWADY WSNILIPPHM ASRSDVVDHF KRKFYQRYID PGLVVEPMAT SSSSQPAKPS VAQPSSSSST PSNNQPRQRN
101: SGQASRTSGT PTTPTSNPTS LRWDRNTIQF SVNAWVFVVA VLSIFPLTPA NLSNRAYRLS FLGTACSSLY SLYSVYGKPR AWNLQAVQVW FQSVIVTKDF
201: ISFIYCLTFV TSHLYLKFSL IPVLCRSLEH VGKFLRRNFG RSSLYRKYLE EACVWVESNV TTLNILSSQA EIGLGFLLVV SLLSWQRNII QTFMYWQILK
301: LMYHAPATAG YHQNVWAKIG GLVNPVVQRA PFLNTPISTI QRWWFR
Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.