Factsheet for GSMUA_Achr8P29730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P26350_001
GSMUA_Achr8P03880_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	GSMUA_Achr3P26350_001	AT5G49540.1	21798944
AT3G02420.1	GSMUA_Achr8P03880_001	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	84.88	82.02
GSMUA_Achr7P17170_001	Banana	plastid	63.66	75.52
Solyc02g089780.2.1	Tomato	cytosol	24.71	70.25
PGSC0003DMT400048302	Potato	cytosol	67.73	66.95
Bra021462.1-P	Field mustard	cytosol	65.99	66.18
VIT_14s0083g00300.t01	Wine grape	cytosol	65.41	66.18
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	66.86	66.09
Solyc03g045090.2.1	Tomato	nucleus, unclear	65.99	65.61
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	18.31	64.95
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	64.83	64.27
Os01t0641700-01	Rice	plastid	45.93	58.74
KRG93820	Soybean	cytosol, nucleus, plastid	51.74	56.15
KRH18270	Soybean	endoplasmic reticulum	63.66	55.3
EES03339	Sorghum	plastid	52.62	54.03
TraesCS3A01G230700.1	Wheat	plastid	45.64	51.99
TraesCS3D01G222600.1	Wheat	plastid	45.64	51.99
TraesCS3B01G260000.1	Wheat	plasma membrane	45.93	49.84
Zm00001d044089_P002	Maize	plastid	48.26	46.5

Protein Annotations

EnsemblPlants:GSMUA_Achr8P29730_001	EnsemblPlants:GSMUA_Achr8T29730_001	EnsemblPlantsGene:GSMUA_Achr8G29730_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF18	PFAM:PF03661	SEG:seg	UniParc:UPI000295E99F
UniProt:M0TUS5	MapMan:35.2	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G29730_001]

Coordinates

chr8:+:32036092..32045226

Molecular Weight (calculated)

39187.0 Da

IEP (calculated)

10.052

GRAVY (calculated)

-0.114

Length

344 amino acids

Sequence
(BLAST)

001: MGEEEERDPQ RLKRIAAAAY DYDNDPRWAE YWSNVLIPPH MAARSDVVDH FKRKFYQRFI DPDLVVEAMS STSSSQSSRA SDGPSSQTTA QNLRPQNSGS
101: GSGSTGRAPS TGRNVNSLRL DQRSIQFSVN AWVLVVATLG MLPVAPRNLS NKAYRLSLLG TACSSVCSLY TVYGKPRAWN LPSIQTWLQT IIGAKDFIHF
201: IYCITLITSK LHLKFALIPV FCWAVDHVAR FLRRNFARST LYRKYLEEPC IWVEANGTTL NILSSNAEIA LGFLLIISLF SLQRNIIQTF IYWQLLKLMY
301: HAPVTAGYHQ SVWARIGRAV NPYIYRYTPF LNSPISAVQR WWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.