Factsheet for TraesCS3B01G260000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G381200.1
TraesCS1B01G403700.1
TraesCS1D01G389000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	TraesCS1A01G381200.1	AT5G49540.1	21798944
AT3G02420.1	TraesCS1B01G403700.1	AT5G49540.1	21798944
AT3G02420.1	TraesCS1D01G389000.1	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G230700.1	Wheat	plastid	88.64	93.05
TraesCS3D01G222600.1	Wheat	plastid	88.33	92.72
Os01t0641700-01	Rice	plastid	70.98	83.64
EES03339	Sorghum	plastid	72.56	68.66
Zm00001d044089_P002	Maize	plastid	70.98	63.03
GSMUA_Achr7P17170_001	Banana	plastid	44.16	48.28
GSMUA_Achr8P29730_001	Banana	cytosol	49.84	45.93
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	49.21	43.82
VIT_14s0083g00300.t01	Wine grape	cytosol	44.8	41.76
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	46.06	41.71
PGSC0003DMT400048302	Potato	cytosol	45.74	41.67
Bra021462.1-P	Field mustard	cytosol	44.8	41.4
Solyc03g045090.2.1	Tomato	nucleus, unclear	45.11	41.33
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	44.8	40.92
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	43.53	39.66
TraesCS1B01G464300.1	Wheat	cytosol	43.22	39.26
KRH18270	Soybean	endoplasmic reticulum	43.53	34.85
KRG93820	Soybean	cytosol, nucleus, plastid	34.07	34.07
Solyc02g089780.2.1	Tomato	cytosol	12.62	33.06

Protein Annotations

EnsemblPlants:TraesCS3B01G260000.1	EnsemblPlantsGene:TraesCS3B01G260000	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF20	PFAM:PF03661	SEG:seg	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr3B:-:417728735..417734404

Molecular Weight (calculated)

35658.4 Da

IEP (calculated)

9.657

GRAVY (calculated)

0.148

Length

317 amino acids

Sequence
(BLAST)

001: MVEFVRVSQD PRLLALMSSF TAGFQLVAKQ CRQDSPPSPQ GPDFVAGGMS SASSSQFPAS TERESTAAND NAIPHDPGAD SAGPAQSRLS LQLDQRSLHF
101: SVNAWVLIVA LIGIIPLATR QLQLKGYRLS LLGTTCTTGY AIFALYGLPR VGNTQAVQAW CHHVTSSKDF IPFMYCLMFV TSKLHLKLVL VPVICWALEH
201: VARFLRRHFT NSSLYRAYLE PLCTWVEANT TAVNFLIANA EILLGFLMIL SLFSKQRNAM QTFMYWQLLK LMYHSPFTAG YHRAIWLKIG RTVNPYISNY
301: TPFLHDPINA GMRWWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.