Factsheet for Zm00001d044089_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009496_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	Zm00001d009496_P001	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0641700-01	Rice	plastid	64.43	85.5
EES03339	Sorghum	plastid	79.27	84.48
TraesCS3A01G230700.1	Wheat	plastid	63.03	74.5
TraesCS3D01G222600.1	Wheat	plastid	62.75	74.17
TraesCS3B01G260000.1	Wheat	plasma membrane	63.03	70.98
GSMUA_Achr7P17170_001	Banana	plastid	40.06	49.31
GSMUA_Achr8P29730_001	Banana	cytosol	46.5	48.26
VIT_14s0083g00300.t01	Wine grape	cytosol	44.26	46.47
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	44.82	44.94
Zm00001d039182_P001	Maize	extracellular, plasma membrane	43.42	44.67
Bra021462.1-P	Field mustard	cytosol	42.3	44.02
PGSC0003DMT400048302	Potato	cytosol	42.02	43.1
Solyc03g045090.2.1	Tomato	nucleus, unclear	41.74	43.06
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	41.18	42.36
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	40.9	41.95
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	45.66	40.05
Solyc02g089780.2.1	Tomato	cytosol	12.89	38.02
KRH18270	Soybean	endoplasmic reticulum	40.62	36.62
KRG93820	Soybean	cytosol, nucleus, plastid	32.21	36.28

Protein Annotations

EnsemblPlants:Zm00001d044089_P002	EnsemblPlants:Zm00001d044089_T002	EnsemblPlantsGene:Zm00001d044089	EntrezGene:100276047	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF20	PFAM:PF03661	ProteinID:ONM39891.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0008457182	UniProt:A0A1D6NHN2	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:+:218788121..218800295

Molecular Weight (calculated)

39977.1 Da

IEP (calculated)

10.138

GRAVY (calculated)

-0.028

Length

357 amino acids

Sequence
(BLAST)

001: MRDAFSSSWL STVATAAYDY QQIRGGRSTL RAPPSCRTSS PTPMSARTSS KSSTAASSYV LLHSAMPQFS HLRAPPGACD DSDFSVGGMS STTSIQPSAS
101: SGGASTSADE NARPPDSGTN SSGPARSILS LQLDQRSLHF SVSAWVLIVA LIGIFPLAPH SLQYKGYRLS LLGTTCTTGY ALFALYRLPR AGNMQAVQVW
201: CHHVTASKDF IPFMYCLMFS TSKLHLKLVL VPVICWALEH VARFLRRHFT SSSLYRTYLE QPCTWVETNT NAVQFLRSNA EILTGFLLIL SLFSRQRNLM
301: QTFMYWQLLK LMYHSPFTAA YHRAIWLKIG RTINPYIHRY TPFLHDPINA GMRWWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.