Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 94.86 94.86
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 81.03 80.39
Os01t0226300-01 Rice plasma membrane 45.85 65.17
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 67.98 64.91
Zm00001d012776_P001 Maize extracellular 64.82 64.82
Os01t0736900-01 Rice plasma membrane 64.43 64.43
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 64.82 64.31
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 65.22 63.95
Zm00001d043551_P003 Maize plasma membrane 64.82 63.81
Os05t0526400-01 Rice plasma membrane 63.24 63.74
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 62.85 63.35
KXG33320 Sorghum cytosol, nucleus, plasma membrane 64.43 63.18
EES19841 Sorghum cytosol, nucleus, plasma membrane 63.24 62.75
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 61.26 62.5
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 61.26 62.5
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 61.26 62.25
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 62.45 61.96
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 61.26 61.75
TraesCS3A01G278800.1 Wheat golgi 60.47 61.69
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 61.26 61.51
Zm00001d038768_P001 Maize extracellular, mitochondrion 61.66 61.42
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 61.26 61.26
GSMUA_Achr3P31920_001 Banana cytosol 52.96 61.19
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 64.82 60.74
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 60.08 60.32
KRH35223 Soybean cytosol, nucleus, plasma membrane 58.89 59.6
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 59.68 59.45
GSMUA_Achr4P08400_001 Banana cytosol 59.29 59.29
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 55.34 56.0
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 61.26 55.56
KXG31516 Sorghum cytosol, nucleus, plasma membrane 61.66 54.93
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 60.87 53.85
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 60.47 53.5
Zm00001d020229_P001 Maize plasma membrane 32.02 53.29
Zm00001d016041_P001 Maize extracellular 47.83 52.61
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 47.83 52.61
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 62.45 51.63
Zm00001d020729_P001 Maize plasma membrane 19.37 51.58
EER89811 Sorghum peroxisome 52.17 51.56
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 46.64 50.86
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.99 49.62
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.99 49.62
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.99 49.62
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 50.99 49.43
TraesCS1A01G346800.3 Wheat plasma membrane 49.01 49.21
Os06t0503400-01 Rice plasma membrane 51.38 49.06
HORVU3Hr1G030760.2 Barley mitochondrion 60.47 48.73
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 60.47 47.52
PGSC0003DMT400016142 Potato endoplasmic reticulum, golgi, peroxisome 44.66 46.31
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 47.43 45.98
HORVU7Hr1G081290.4 Barley plastid 40.71 44.59
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 16.21 43.62
KRG91601 Soybean mitochondrion 58.5 43.53
HORVU7Hr1G075700.2 Barley mitochondrion 50.59 42.67
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 34.39 41.63
PGSC0003DMT400002449 Potato cytosol, nucleus, plasma membrane 40.32 40.16
GSMUA_Achr3P15760_001 Banana cytosol 23.32 39.33
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 23.32 38.31
PGSC0003DMT400042905 Potato cytosol, peroxisome, plasma membrane 33.99 36.13
PGSC0003DMT400074138 Potato plasma membrane 41.9 35.33
PGSC0003DMT400066222 Potato plasma membrane 28.46 35.29
PGSC0003DMT400026113 Potato plasma membrane, plastid 21.74 22.54
Protein Annotations
EntrezGene:102579160MapMan:13.7.2.1ncoils:CoilGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
UniProt:M1CTK4PFAM:PF02453EnsemblPlantsGene:PGSC0003DMG402028903PGSC:PGSC0003DMG402028903EnsemblPlants:PGSC0003DMT400074360PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0002963C0ERefSeq:XP_006360189.1
SEG:seg:::::
Description
24 kDa seed maturation protein [Source:PGSC_GENE;Acc:PGSC0003DMG402028903]
Coordinates
chr6:+:37973883..37977255
Molecular Weight (calculated)
28215.6 Da
IEP (calculated)
8.898
GRAVY (calculated)
0.211
Length
253 amino acids
Sequence
(BLAST)
001: MADHAGENDS FVDSVMDKVN DKLHSHDSSS DSDDDKGKRS PVNAVKTKIY RLFGREKPLH KVLGGGKPAD IFLWRDKKVT AGVLGFATVI WALFELLEYH
101: LLTLVCHILI VAVAVLFLWS NASAFINTAP PQIPEVVLPK DIVLGVASAL RIEINRALEI LRDIASGKDL KKFLVVIVGL WVVSVLGNIW NFLTLFYIVF
201: VLLHTVPLLY EKYEDKVDAF AEKAEAEIKK HYAVFDANVL SKIPRGPLKG KKQ
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.