Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 87.89 | 98.95 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 87.89 | 98.95 |
| Os01t0226300-01 | Rice | plasma membrane | 50.0 | 90.45 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 86.65 | 88.85 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 70.5 | 81.36 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 71.43 | 80.99 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 70.19 | 73.86 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 55.28 | 69.8 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 54.35 | 68.9 |
| KRH59988 | Soybean | mitochondrion | 53.42 | 67.72 |
| TraesCS3A01G278800.1 | Wheat | golgi | 50.62 | 65.73 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 51.24 | 65.48 |
| Solyc01g095200.2.1 | Tomato | plastid | 53.42 | 65.4 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 53.73 | 65.28 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 50.93 | 64.31 |
| Solyc03g007740.2.1 | Tomato | nucleus | 50.31 | 63.53 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.07 | 62.95 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.07 | 62.95 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 48.76 | 62.8 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 49.69 | 62.75 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 51.24 | 62.74 |
| KRH40357 | Soybean | endoplasmic reticulum | 50.0 | 62.65 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 48.45 | 62.4 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 52.17 | 62.22 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 48.45 | 62.15 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 51.86 | 61.85 |
| KRH00872 | Soybean | endoplasmic reticulum | 49.69 | 61.78 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 47.83 | 61.6 |
| KRH06560 | Soybean | endoplasmic reticulum | 48.76 | 61.33 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 47.52 | 60.47 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 48.14 | 60.31 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 47.2 | 60.08 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 46.58 | 59.06 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 45.96 | 58.27 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 45.96 | 58.27 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 45.65 | 58.1 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 45.03 | 57.77 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 45.03 | 57.77 |
| AT4G23630.2 | Thale cress | nucleus | 49.07 | 57.45 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 47.52 | 57.3 |
| Bra019285.1-P | Field mustard | cytosol | 47.52 | 57.09 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 44.41 | 56.97 |
| Bra000739.1-P | Field mustard | cytosol | 47.2 | 56.93 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 47.83 | 56.83 |
| CDY10954 | Canola | cytosol | 47.52 | 56.67 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 44.72 | 56.47 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.41 | 56.3 |
| AT4G11220.1 | Thale cress | nucleus | 47.2 | 56.09 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 27.95 | 55.9 |
| CDY24806 | Canola | cytosol | 47.52 | 55.84 |
| Bra010539.1-P | Field mustard | cytosol | 46.27 | 55.39 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 47.2 | 55.27 |
| Bra013717.1-P | Field mustard | nucleus | 46.89 | 54.71 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 46.89 | 54.71 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 42.24 | 54.4 |
| CDY41666 | Canola | cytosol | 46.58 | 54.35 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 14.6 | 54.02 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 42.24 | 53.97 |
| TraesCS1A01G081500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 41.61 | 53.39 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 9.63 | 51.67 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 49.69 | 50.96 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 39.13 | 48.46 |
| AT4G01230.2 | Thale cress | cytosol | 36.02 | 47.54 |
| CDY48510 | Canola | cytosol | 35.4 | 46.91 |
| Bra037369.1-P | Field mustard | cytosol | 35.4 | 46.91 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 35.4 | 46.91 |
| CDY05135 | Canola | mitochondrion | 45.34 | 46.65 |
| CDY62522 | Canola | cytosol | 10.87 | 43.75 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.61 | 40.23 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 27.33 | 40.18 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 28.88 | 39.74 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 30.43 | 39.68 |
| KRG91601 | Soybean | mitochondrion | 40.99 | 38.82 |
| Bra035242.1-P | Field mustard | cytosol | 23.6 | 38.0 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 27.64 | 36.33 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 21.12 | 34.17 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 18.32 | 32.78 |
| CDX89122 | Canola | extracellular, mitochondrion | 14.91 | 31.37 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 22.05 | 31.28 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 25.47 | 24.85 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G151200.1 | EnsemblPlantsGene:TraesCS3A01G151200 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF125 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr3A:+:140041001..140043329
Molecular Weight (calculated)
34998.5 Da
IEP (calculated)
7.345
GRAVY (calculated)
0.129
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQPHAEDA GHKPETLMEK IADKLHVGGG DHSSSSSDSD KEEQPRPSAP PAPAPAPAPA PAASEVTTAS FAASATAAAA DAKNKMFRLF GREQPIHKVL
101: GGGKPADVFM WRNKHISAGV LGGATAIWIL FELLGYHLLA FLGHALIFSL GVLFLWSNAS SFINKSPPRI PEVIIPEDLV VNIALSTRHE INRAFANLRQ
201: IALGRDIKKF LIVIAGLWLL SILGSCCNFL TLFYIGEGSQ LSIPFLAPLL PNVDLVFTVD LSLLCQTVFV VLHTVPVIYE KYEDQIDTYG EKGWIEVKKQ
301: YAVFDAKVLS KVPRGPLKDK KN
101: GGGKPADVFM WRNKHISAGV LGGATAIWIL FELLGYHLLA FLGHALIFSL GVLFLWSNAS SFINKSPPRI PEVIIPEDLV VNIALSTRHE INRAFANLRQ
201: IALGRDIKKF LIVIAGLWLL SILGSCCNFL TLFYIGEGSQ LSIPFLAPLL PNVDLVFTVD LSLLCQTVFV VLHTVPVIYE KYEDQIDTYG EKGWIEVKKQ
301: YAVFDAKVLS KVPRGPLKDK KN
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.