Factsheet for TraesCS4A01G135900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G171300.2	Wheat	peroxisome	99.12	99.12
TraesCS4B01G169100.2	Wheat	cytosol, peroxisome, vacuole	98.68	98.68
HORVU4Hr1G050020.1	Barley	plastid	96.48	84.56
EER92307	Sorghum	peroxisome	80.62	80.26
Os03t0336600-02	Rice	plasma membrane	80.62	79.22
Zm00001d047517_P001	Maize	peroxisome	79.3	78.95
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	53.3	63.68
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	63.44	62.61
KRH18469	Soybean	plasma membrane	49.34	56.57
KRG93546	Soybean	plasma membrane	49.34	56.28
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	58.15	55.46
Bra034153.1-P	Field mustard	plasma membrane	49.78	50.67
CDY36282	Canola	plasma membrane	49.34	50.22
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	49.34	46.86
CDY08567	Canola	cytosol	49.34	46.47
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	48.9	46.44
AT3G10915.7	Thale cress	plasma membrane	51.1	46.22
TraesCS2A01G544000.1	Wheat	plasma membrane	29.52	33.67
TraesCS3A01G261500.1	Wheat	plasma membrane	29.52	30.59
TraesCS7A01G341800.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	33.92	29.62
TraesCS2A01G254300.1	Wheat	cytosol, peroxisome, vacuole	32.16	29.55
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	41.41	28.75
TraesCS3A01G278800.1	Wheat	golgi	30.84	28.23
TraesCS1A01G373800.1	Wheat	cytosol, peroxisome, plasma membrane	27.75	26.92
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	26.87	24.3
TraesCS1A01G346800.3	Wheat	plasma membrane	26.87	24.21
TraesCS5A01G418200.1	Wheat	cytosol, peroxisome, plasma membrane	26.87	23.37
TraesCS3A01G151200.1	Wheat	cytosol, peroxisome, plasma membrane	31.28	22.05
TraesCS3A01G051200.1	Wheat	cytosol	28.19	19.39

Protein Annotations

EnsemblPlants:TraesCS4A01G135900.1	EnsemblPlantsGene:TraesCS4A01G135900	InterPro:IPR003388	InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF67
PFAM:PF02453	PFscan:PS50845	SEG:seg	TMHMM:TMhelix	MapMan:13.7.2.1	:

Description

No Description!

Coordinates

chr4A:-:188633461..188635346

Molecular Weight (calculated)

25158.8 Da

IEP (calculated)

8.634

GRAVY (calculated)

0.313

Length

227 amino acids

Sequence
(BLAST)

001: METSASGAEP ANAGIEGSAD PCSSAGGGHR LSVHQIVGGG KAADIILWKC KRATVGVIFG ATIAWWLFEK SELSFLTICC DVLLILIVVQ LIWVKISGLL
101: NKQPRQLPEL VLSEEMVNNA AASFRVKVNN MLMIAHDITL GKDFRLFFQV VSVLWLLSVI GNFYSSVTLA YIGTIALVTV PVLYHRHQEH VDRYAGMVHR
201: NISRHYKIVD ENVISRLPRS FIRDKND

Best Arabidopsis Sequence Match ( AT3G10915.2 )
(BLAST)

001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.