Factsheet for Bra029878.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08567	Canola	cytosol	96.23	95.44
Bra034153.1-P	Field mustard	plasma membrane	82.01	87.89
AT3G10915.7	Thale cress	plasma membrane	79.08	75.3
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	49.79	62.63
KRG93546	Soybean	plasma membrane	49.37	59.3
KRH18469	Soybean	plasma membrane	48.54	58.59
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	56.07	56.3
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	51.05	53.04
EER92307	Sorghum	peroxisome	49.79	52.19
Zm00001d047517_P001	Maize	peroxisome	49.37	51.75
Os03t0336600-02	Rice	plasma membrane	48.54	50.22
TraesCS4D01G171300.2	Wheat	peroxisome	47.28	49.78
TraesCS4A01G135900.1	Wheat	peroxisome	46.86	49.34
TraesCS4B01G169100.2	Wheat	cytosol, peroxisome, vacuole	46.44	48.9
HORVU4Hr1G050020.1	Barley	plastid	48.54	44.79
Bra003171.1-P	Field mustard	plasma membrane	30.13	35.47
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	28.45	33.17
Bra001748.1-P	Field mustard	plastid	26.78	32.65
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	31.38	30.74
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	31.38	30.0
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	41.0	29.97
Bra037594.1-P	Field mustard	plasma membrane	28.03	29.91
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.96	29.48
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	30.54	29.08
Bra003455.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.54	28.74
Bra040612.1-P	Field mustard	plasma membrane	21.76	28.42
Bra029827.1-P	Field mustard	plasma membrane	27.2	27.2
Bra019285.1-P	Field mustard	cytosol	30.13	26.87
Bra000739.1-P	Field mustard	cytosol	29.71	26.59
Bra004291.1-P	Field mustard	plasma membrane	23.43	26.54
Bra013717.1-P	Field mustard	nucleus	29.71	25.72
Bra010539.1-P	Field mustard	cytosol	28.87	25.65
Bra037369.1-P	Field mustard	cytosol	25.94	25.51
Bra035242.1-P	Field mustard	cytosol	19.25	23.0
Bra039207.1-P	Field mustard	plasma membrane	18.41	21.15
Bra033951.1-P	Field mustard	plasma membrane	23.01	18.21

Protein Annotations

EnsemblPlants:Bra029878.1	EnsemblPlants:Bra029878.1-P	EnsemblPlantsGene:Bra029878	InterPro:IPR003388	InterPro:Reticulon	PANTHER:PTHR10994
PANTHER:PTHR10994:SF67	PFAM:PF02453	PFscan:PS50845	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002547847
UniProt:M4EM58	MapMan:13.7.2.1	:	:	:	:

Description

AT3G10915 (E=4e-094) | reticulon family protein

Coordinates

chrA05:+:21890759..21891941

Molecular Weight (calculated)

26506.1 Da

IEP (calculated)

7.581

GRAVY (calculated)

0.176

Length

239 amino acids

Sequence
(BLAST)

001: MRVVDSPMDS SSDIEGDSEG RNEGGGSTSD YRLLGRQVTV HQFMGGGKGE SFLSADLLLW RRRNHSLGVI VLSTAAWLTF ELSGLPILSV SSDVLLIGII
101: ISFVHAQVSS FRNRQTDSLP ELVLSEEMVN STAASFRVKL NHLLVMAHDV TVGNDFRLFF KVVICLWLLS AIGSYISFCT LVYIGTILSV TIPALYSKYQ
201: RKVDKCCGLI HRQLSHQYKL VDENVISKLS WSLSKDKDS

Best Arabidopsis Sequence Match ( AT3G10915.2 )
(BLAST)

001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.