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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:peroxisome, plastid, secretory
BaCelLo:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66516 Canola endoplasmic reticulum, extracellular 83.04 100.0
AT3G18260.1 Thale cress plasma membrane 85.27 84.89
KRH48561 Soybean plasma membrane 50.89 51.35
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 21.43 51.06
Solyc03g119190.2.1 Tomato plasma membrane 49.11 50.23
KRH39144 Soybean plasma membrane 49.11 49.55
VIT_17s0000g03260.t01 Wine grape plasma membrane 45.54 48.11
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 40.62 43.33
TraesCS3B01G294700.1 Wheat plasma membrane 41.52 42.47
TraesCS3A01G261500.1 Wheat plasma membrane 41.07 42.01
KXG33168 Sorghum golgi, peroxisome, plasma membrane 39.73 41.2
HORVU3Hr1G064240.2 Barley plasma membrane 39.73 40.64
EES19907 Sorghum cytosol, peroxisome, plasma membrane 40.62 40.27
Os01t0691400-00 Rice cytosol, peroxisome 41.52 40.26
Os01t0139000-00 Rice plasma membrane 37.95 39.91
GSMUA_Achr8P31770_001 Banana peroxisome 39.29 39.46
Zm00001d038910_P001 Maize plasma membrane 39.73 39.21
TraesCS1D01G380400.1 Wheat cytosol, peroxisome, plasma membrane 40.62 38.89
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 37.95 38.46
TraesCS1B01G393700.1 Wheat cytosol, peroxisome, plasma membrane 40.18 38.46
TraesCS1A01G373800.1 Wheat cytosol, peroxisome, plasma membrane 40.18 38.46
TraesCS3D01G050800.1 Wheat mitochondrion 38.39 36.75
EES02516 Sorghum peroxisome, plastid 35.71 36.7
TraesCS3B01G060400.1 Wheat mitochondrion 38.39 36.29
Bra004291.1-P Field mustard plasma membrane 33.93 36.02
Bra029827.1-P Field mustard plasma membrane 36.61 34.31
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 37.05 33.07
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 37.05 32.68
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 36.16 32.27
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 35.71 32.0
Bra000739.1-P Field mustard cytosol 37.05 31.09
Bra013717.1-P Field mustard nucleus 36.61 29.71
Bra037369.1-P Field mustard cytosol 32.14 29.63
Bra019285.1-P Field mustard cytosol 35.27 29.48
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 26.79 29.27
Bra003171.1-P Field mustard plasma membrane 26.34 29.06
Bra010539.1-P Field mustard cytosol 34.82 29.0
HORVU1Hr1G083110.3 Barley plastid 37.5 28.77
Bra034153.1-P Field mustard plasma membrane 28.57 28.7
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 29.91 28.03
Zm00001d008590_P001 Maize plastid 16.52 27.82
Bra001748.1-P Field mustard plastid 23.66 27.04
TraesCS3A01G051200.1 Wheat cytosol 38.84 26.36
Bra040612.1-P Field mustard plasma membrane 20.98 25.68
Bra033951.1-P Field mustard plasma membrane 33.48 24.83
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 38.39 24.71
Bra039207.1-P Field mustard plasma membrane 21.88 23.56
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 25.45 23.36
GSMUA_AchrUn_... Banana golgi 36.61 23.3
Bra035242.1-P Field mustard cytosol 20.09 22.5
Protein Annotations
EnsemblPlants:Bra037594.1EnsemblPlants:Bra037594.1-PEnsemblPlantsGene:Bra037594GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF85PFAM:PF02453PFscan:PS50845TMHMM:TMhelix
UniParc:UPI0002545053UniProt:M4F931MapMan:13.7.2.1:::
Description
AT3G18260 (E=8e-109) | reticulon family protein (RTNLB9)
Coordinates
chrA01:+:22174168..22175307
Molecular Weight (calculated)
25731.8 Da
IEP (calculated)
8.473
GRAVY (calculated)
0.250
Length
224 amino acids
Sequence
(BLAST)
001: MPIFGGSSDS EEERTMHQQT KLFNRQRSIH SIFGGGKVAD ILLWREPKIA ATLVIGVSLL WFLLEVVEYN FITLVCHASM TSMLLFFIWS TASDFLNWER
101: PIIPVVVLDE SSFKELATSF HDRFNQILSK LLDLACGRDP PLFFLTTISL YILSVIGTCI NFMNLLFIGF VSMQTLPIMY EMYEDDVDRV ASMLMRKMRK
201: LYRKVDSNVL SKIPRGTVKS KKHA
Best Arabidopsis Sequence Match ( AT3G18260.1 )
(BLAST)
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.