Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67571 | Canola | plasma membrane | 85.33 | 85.71 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 70.67 | 85.48 |
| Bra037594.1-P | Field mustard | plasma membrane | 84.89 | 85.27 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 84.44 | 84.82 |
| CDX75962 | Canola | plasma membrane | 84.44 | 84.82 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 21.33 | 51.06 |
| KRH39144 | Soybean | plasma membrane | 50.22 | 50.9 |
| KRH48561 | Soybean | plasma membrane | 50.22 | 50.9 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 46.22 | 49.06 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 47.11 | 48.4 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 40.44 | 42.13 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 39.11 | 41.9 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 41.33 | 41.15 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 40.0 | 41.1 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 39.56 | 40.64 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 39.56 | 39.91 |
| Os01t0139000-00 | Rice | plasma membrane | 37.78 | 39.91 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 40.89 | 39.83 |
| Zm00001d038910_P001 | Maize | plasma membrane | 40.0 | 39.65 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 38.22 | 39.27 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 38.22 | 38.91 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.44 | 38.89 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.0 | 38.46 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.0 | 38.46 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 37.78 | 36.32 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 37.33 | 35.44 |
| AT1G68230.2 | Thale cress | plasma membrane | 33.33 | 34.88 |
| EES02516 | Sorghum | peroxisome, plastid | 33.78 | 34.86 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.22 | 33.46 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 40.0 | 33.21 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 37.33 | 32.94 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.89 | 32.81 |
| AT4G23630.2 | Thale cress | nucleus | 38.67 | 31.64 |
| AT4G01230.2 | Thale cress | cytosol | 33.78 | 31.15 |
| AT3G10260.3 | Thale cress | plasma membrane | 36.89 | 31.09 |
| AT4G11220.1 | Thale cress | nucleus | 37.33 | 31.0 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 27.11 | 30.05 |
| HORVU1Hr1G083110.3 | Barley | plastid | 36.89 | 28.42 |
| AT2G15280.1 | Thale cress | plasma membrane | 24.0 | 26.87 |
| Zm00001d008590_P001 | Maize | plastid | 15.56 | 26.32 |
| AT3G10915.7 | Thale cress | plasma membrane | 29.33 | 26.29 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 38.22 | 26.06 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 37.78 | 24.43 |
| AT3G19460.3 | Thale cress | plasma membrane | 25.33 | 24.36 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 21.78 | 23.79 |
| GSMUA_AchrUn_... | Banana | golgi | 36.44 | 23.3 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:821354 | ProteinID:AEE76073.1 | ArrayExpress:AT3G18260 | EnsemblPlantsGene:AT3G18260 | RefSeq:AT3G18260 |
| TAIR:AT3G18260 | RefSeq:AT3G18260-TAIR-G | EnsemblPlants:AT3G18260.1 | TAIR:AT3G18260.1 | EMBL:AY087239 | ProteinID:BAB01175.1 |
| EMBL:BT024845 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | RefSeq:NP_566604.1 |
| PFAM:PF02453 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007064 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF85 | UniProt:Q9LJQ5 |
| InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI00000A4C0E | SEG:seg | : | : |
Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
Coordinates
chr3:-:6260135..6261606
Molecular Weight (calculated)
25881.9 Da
IEP (calculated)
9.568
GRAVY (calculated)
0.232
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.