Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 25.0 | 56.38 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 54.72 | 52.97 |
| KRH48561 | Soybean | plasma membrane | 55.19 | 52.7 |
| KRH39144 | Soybean | plasma membrane | 54.72 | 52.25 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 47.64 | 48.1 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 41.98 | 47.85 |
| AT3G18260.1 | Thale cress | plasma membrane | 49.06 | 46.22 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 49.06 | 46.02 |
| CDY67571 | Canola | plasma membrane | 48.58 | 45.98 |
| Bra037594.1-P | Field mustard | plasma membrane | 48.11 | 45.54 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 46.7 | 45.21 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 47.64 | 45.09 |
| CDX75962 | Canola | plasma membrane | 47.64 | 45.09 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 46.23 | 44.75 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 45.75 | 44.29 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 44.81 | 43.98 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 45.75 | 43.89 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 45.75 | 43.5 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 46.7 | 42.86 |
| Zm00001d038910_P001 | Maize | plasma membrane | 45.75 | 42.73 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 44.81 | 40.6 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 44.81 | 40.6 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.87 | 39.74 |
| Os01t0139000-00 | Rice | plasma membrane | 38.68 | 38.5 |
| EES02516 | Sorghum | peroxisome, plastid | 37.26 | 36.24 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 37.26 | 33.76 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 37.74 | 33.76 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 38.68 | 32.16 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 37.26 | 31.35 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 37.26 | 31.1 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 36.32 | 31.05 |
| HORVU1Hr1G083110.3 | Barley | plastid | 42.45 | 30.82 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 30.19 | 30.62 |
| Zm00001d008590_P001 | Maize | plastid | 18.4 | 29.32 |
| VIT_03s0180g00170.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 27.36 | 28.02 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 7.55 | 26.67 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 45.75 | 25.94 |
| GSMUA_AchrUn_... | Banana | golgi | 41.98 | 25.28 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 37.74 | 24.24 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 37.74 | 22.99 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 16.98 | 20.0 |
| VIT_00s0253g00030.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 19.34 | 19.16 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 25.0 | 16.21 |
Protein Annotations
| EntrezGene:100245571 | wikigene:100245571 | MapMan:13.7.2.1 | ProteinID:CBI15493 | ProteinID:CBI15493.3 | UniProt:D7SJ32 |
| EMBL:FN594950 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | EntrezGene:LOC100245571 | wikigene:LOC100245571 |
| PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF81 | InterPro:Reticulon | TMHMM:TMhelix |
| UniParc:UPI00015C9305 | ArrayExpress:VIT_17s0000g03260 | EnsemblPlantsGene:VIT_17s0000g03260 | EnsemblPlants:VIT_17s0000g03260.t01 | RefSeq:XP_002277077 | RefSeq:XP_002277077.1 |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:D7SJ32]
Coordinates
chr17:-:3141621..3143615
Molecular Weight (calculated)
24359.2 Da
IEP (calculated)
6.148
GRAVY (calculated)
0.486
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDPTPPVKL FGRQRSIHEV LGGGTVADVL LWRNKIASAA LLIGSEVMWF LFEVVEYSFV SLLCHILITA MLVLFIWSTL SEHFKWPPFE IPEIILDEYA
101: FNSIASILHE RLNQFLSIIV DISCGKDLPL FFLTLVSLWI LSVMGNYCSF CKLLFVGVLF LETLPFLYER YEEDVDHHAI IMHQQIKKML SEVNLSLLNK
201: VPRGPVKEKK TT
101: FNSIASILHE RLNQFLSIIV DISCGKDLPL FFLTLVSLWI LSVMGNYCSF CKLLFVGVLF LETLPFLYER YEEDVDHHAI IMHQQIKKML SEVNLSLLNK
201: VPRGPVKEKK TT
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.