Factsheet for VIT_03s0180g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91024	Soybean	plasma membrane	66.18	67.16
PGSC0003DMT400066222	Potato	plasma membrane	65.7	66.67
KRH35738	Soybean	endoplasmic reticulum	63.77	64.71
Solyc01g107620.2.1	Tomato	plasma membrane	65.7	62.1
AT2G15280.1	Thale cress	plasma membrane	55.07	56.72
Os04t0670000-01	Rice	plasma membrane	52.66	54.77
Zm00001d026575_P001	Maize	mitochondrion, peroxisome, plasma membrane, plastid, vacuole	51.69	54.04
EES11624	Sorghum	plasma membrane	51.69	54.04
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	57.0	52.91
Zm00001d001901_P002	Maize	plasma membrane	50.24	52.53
Bra040612.1-P	Field mustard	plasma membrane	44.93	50.82
TraesCS2A01G544000.1	Wheat	plasma membrane	48.79	50.75
TraesCS2D01G545200.1	Wheat	plasma membrane	48.31	50.51
CDX71213	Canola	plasma membrane	48.79	49.75
CDY48222	Canola	cytosol, endoplasmic reticulum, plasma membrane	48.31	49.26
TraesCS2B01G574200.2	Wheat	plasma membrane	47.34	49.25
VIT_08s0007g01720.t01	Wine grape	plasma membrane	45.89	45.45
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	58.45	42.91
HORVU2Hr1G122310.2	Barley	cytosol, plasma membrane	31.88	35.48
VIT_02s0025g00640.t01	Wine grape	cytosol, nucleus, plasma membrane	40.58	33.33
VIT_15s0046g01760.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.06	33.33
VIT_16s0050g01790.t01	Wine grape	cytosol, nucleus, plasma membrane	35.27	28.74
VIT_12s0028g01090.t01	Wine grape	cytosol, peroxisome, plasma membrane	33.33	27.82
VIT_17s0000g03260.t01	Wine grape	plasma membrane	28.02	27.36
VIT_00s0253g00030.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	26.09	25.23
VIT_02s0025g00590.t01	Wine grape	mitochondrion	6.76	23.33
VIT_07s0031g02730.t01	Wine grape	golgi, mitochondrion, nucleus, plasma membrane	18.84	21.67
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	30.92	19.57
VIT_01s0011g04030.t01	Wine grape	cytosol	30.92	17.11

Protein Annotations

EntrezGene:100255583	wikigene:100255583	MapMan:13.7.2.1	ProteinID:CBI40265	ProteinID:CBI40265.3	UniProt:D7UC00
EMBL:FN596754	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	EntrezGene:LOC100255583	wikigene:LOC100255583
PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF125	InterPro:Reticulon	TMHMM:TMhelix
UniParc:UPI0001982E05	ArrayExpress:VIT_03s0180g00170	EnsemblPlantsGene:VIT_03s0180g00170	EnsemblPlants:VIT_03s0180g00170.t01	RefSeq:XP_002285375	RefSeq:XP_002285375.1
SEG:seg	:	:	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:D7UC00]

Coordinates

chr3:-:6101310..6105927

Molecular Weight (calculated)

23274.8 Da

IEP (calculated)

9.766

GRAVY (calculated)

0.448

Length

207 amino acids

Sequence
(BLAST)

001: MGESDHPSRI SVHQALGGGS VADFLLWRRW CGAAVCLVSA SSLWFLFERA GYNLLSFVAN VVLLLVVILF LWAKSASILN RPLPPLPDME ISEESVVKAA
101: DVIRVWINYA LSVARDIAVG RNVKLFLQVA FGLWVVSYIG SLFNFLTLVY IGVVLSLSVP VLYDKYQDHI DDKLRVTHRV VQTQYKKIDD KILRKIPMPI
201: NMGKKTQ

Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)

001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.