Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040612.1-P | Field mustard | plasma membrane | 88.67 | 98.36 |
| CDX71213 | Canola | plasma membrane | 98.03 | 98.03 |
| AT2G15280.1 | Thale cress | plasma membrane | 76.35 | 77.11 |
| VIT_03s0180g00170.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 49.26 | 48.31 |
| CDX82294 | Canola | plastid | 46.31 | 47.96 |
| CDY22970 | Canola | plasma membrane | 45.81 | 47.45 |
| CDY22971 | Canola | plasma membrane | 45.81 | 47.45 |
| KRG91024 | Soybean | plasma membrane | 47.29 | 47.06 |
| CDY46172 | Canola | plastid | 46.8 | 47.03 |
| CDX99221 | Canola | plasma membrane | 46.8 | 46.8 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 46.8 | 46.57 |
| KRH35738 | Soybean | endoplasmic reticulum | 46.31 | 46.08 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 46.8 | 43.38 |
| EES11624 | Sorghum | plasma membrane | 38.42 | 39.39 |
| Zm00001d001901_P002 | Maize | plasma membrane | 38.42 | 39.39 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 36.95 | 37.69 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 36.45 | 37.37 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 40.89 | 37.22 |
| Os04t0670000-01 | Rice | plasma membrane | 36.45 | 37.19 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 35.47 | 36.18 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 34.48 | 35.35 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 27.59 | 30.11 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 30.05 | 30.05 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 40.89 | 29.43 |
| CDY51584 | Canola | plasma membrane | 29.06 | 29.06 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 27.59 | 27.32 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 27.59 | 27.32 |
| CDY36282 | Canola | plasma membrane | 29.56 | 26.91 |
| CDY08567 | Canola | cytosol | 31.53 | 26.56 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 32.51 | 26.4 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 31.03 | 26.36 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 24.14 | 26.34 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 32.02 | 26.0 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 32.02 | 25.9 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.53 | 25.5 |
| CDX81500 | Canola | plasma membrane | 26.11 | 25.48 |
| CDX96038 | Canola | plasma membrane | 26.11 | 25.12 |
| CDY01898 | Canola | plasma membrane | 25.62 | 24.53 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 30.05 | 24.02 |
| CDY00916 | Canola | plasma membrane | 28.08 | 23.85 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 26.11 | 23.66 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 29.56 | 23.62 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 18.72 | 23.6 |
| CDY08616 | Canola | plasma membrane | 27.59 | 23.43 |
| CDY10954 | Canola | cytosol | 31.03 | 23.33 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 31.53 | 23.27 |
| CDY67571 | Canola | plasma membrane | 25.62 | 23.21 |
| CDX75962 | Canola | plasma membrane | 25.62 | 23.21 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 28.57 | 23.11 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 31.03 | 22.83 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 28.08 | 22.71 |
| CDY41666 | Canola | cytosol | 30.05 | 22.1 |
| CDY24806 | Canola | cytosol | 29.56 | 21.9 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 26.11 | 21.81 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 28.57 | 21.72 |
| CDX76854 | Canola | plasma membrane | 21.67 | 21.26 |
| CDY62522 | Canola | cytosol | 8.37 | 21.25 |
| CDY46067 | Canola | plasma membrane | 21.67 | 21.15 |
| CDY48510 | Canola | cytosol | 25.12 | 20.99 |
| CDY05135 | Canola | mitochondrion | 28.57 | 18.53 |
| CDY12701 | Canola | plasma membrane | 26.6 | 17.88 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 20.69 | 17.14 |
| CDX89122 | Canola | extracellular, mitochondrion | 12.81 | 16.99 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 19.7 | 16.13 |
| CDY56712 | Canola | mitochondrion | 26.6 | 15.21 |
Protein Annotations
| EnsemblPlants:CDY48222 | EnsemblPlantsGene:GSBRNA2T00089063001 | GO:A0A078IDS8 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF125 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDY48222 |
| ProteinID:CDY48222.1 | TMHMM:TMhelix | UniParc:UPI0004EDE1A7 | UniProt:A0A078IDS8 | MapMan:13.7.2.1 | : |
Description
BnaA07g03850DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDS8]
Coordinates
chrLK032760:+:114998..115941
Molecular Weight (calculated)
23433.6 Da
IEP (calculated)
10.496
GRAVY (calculated)
0.441
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKKSHLLQS IGNASVADLV MWKNKRGGIL LLGSATLFWI LFEKCGYSFF PFVANIQLLV VIILFLWAKS AILFNRPMPE LPNLEITEAS LLMIADPLRL
101: LINTLLSIAR DIYVNRNAKQ LFRVSVVLWT ISLVGSFLNF FTILYLGIVL GMLIPILYER YQHHIDEKLS VTHRMIQTQY RKIDERLLQK LIAKPTSKIK
201: KMQ
101: LINTLLSIAR DIYVNRNAKQ LFRVSVVLWT ISLVGSFLNF FTILYLGIVL GMLIPILYER YQHHIDEKLS VTHRMIQTQY RKIDERLLQK LIAKPTSKIK
201: KMQ
001: MEESVHQSIR FGSVADLIMW KNRRGGFLLL GSTTLLWFLF EKCGYSFFPF VVNTQLLSVV ILFLWAKSAI LFNRPMPQLP NLEITEEFVF MVADAIRVWI
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
Arabidopsis Description
RTNLB10Reticulon-like protein B10 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPD8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.