Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08616 | Canola | plasma membrane | 97.49 | 97.49 |
| AT3G10260.3 | Thale cress | plasma membrane | 87.03 | 77.9 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 65.27 | 62.9 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 35.98 | 60.56 |
| Solyc12g006290.1.1 | Tomato | nucleus | 59.0 | 60.52 |
| CDY56712 | Canola | mitochondrion | 87.45 | 58.87 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 58.16 | 56.73 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 58.58 | 56.45 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 56.9 | 55.97 |
| KRH73588 | Soybean | plasma membrane | 57.32 | 55.92 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 59.0 | 55.51 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 53.97 | 52.02 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 51.88 | 51.24 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 52.72 | 51.01 |
| KRG99024 | Soybean | plasma membrane | 56.07 | 50.76 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 52.3 | 50.4 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 51.05 | 49.39 |
| Os07t0142000-01 | Rice | plasma membrane | 49.79 | 48.37 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 60.25 | 48.0 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 49.37 | 47.77 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 51.46 | 47.49 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 51.05 | 47.1 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 51.05 | 46.74 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 48.12 | 46.56 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 50.21 | 45.98 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 47.28 | 45.75 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 46.44 | 45.68 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 41.0 | 39.04 |
| KXG34376 | Sorghum | plasma membrane | 51.05 | 38.85 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 40.59 | 38.65 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 40.59 | 38.19 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 40.17 | 37.8 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 29.29 | 37.63 |
| CDY62522 | Canola | cytosol | 12.13 | 36.25 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 24.27 | 36.02 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 36.4 | 35.8 |
| CDY67571 | Canola | plasma membrane | 33.47 | 35.71 |
| CDX75962 | Canola | plasma membrane | 33.47 | 35.71 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 37.24 | 35.46 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 33.05 | 35.27 |
| CDY48510 | Canola | cytosol | 35.56 | 34.98 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 36.4 | 34.8 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 36.4 | 34.8 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 36.4 | 34.66 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 39.33 | 34.18 |
| CDY10954 | Canola | cytosol | 38.49 | 34.07 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 39.33 | 34.06 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 37.66 | 33.71 |
| CDY24806 | Canola | cytosol | 37.66 | 32.85 |
| CDY41666 | Canola | cytosol | 37.24 | 32.25 |
| CDY46172 | Canola | plastid | 26.78 | 31.68 |
| CDX99221 | Canola | plasma membrane | 25.94 | 30.54 |
| CDX82294 | Canola | plastid | 24.27 | 29.59 |
| CDY22970 | Canola | plasma membrane | 24.27 | 29.59 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 47.28 | 29.5 |
| CDY36282 | Canola | plasma membrane | 27.2 | 29.15 |
| CDY22971 | Canola | plasma membrane | 23.85 | 29.08 |
| CDY05135 | Canola | mitochondrion | 37.66 | 28.75 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 24.27 | 28.57 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 23.85 | 28.08 |
| CDX71213 | Canola | plasma membrane | 23.85 | 28.08 |
| CDY51584 | Canola | plasma membrane | 23.85 | 28.08 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 28.03 | 28.03 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 23.85 | 27.8 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 23.85 | 27.8 |
| CDX96038 | Canola | plasma membrane | 24.27 | 27.49 |
| CDY08567 | Canola | cytosol | 27.62 | 27.39 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 27.62 | 26.94 |
| CDX81500 | Canola | plasma membrane | 23.43 | 26.92 |
| CDY01898 | Canola | plasma membrane | 23.85 | 26.89 |
| CDX89122 | Canola | extracellular, mitochondrion | 13.81 | 21.57 |
| CDX76854 | Canola | plasma membrane | 17.99 | 20.77 |
| CDY46067 | Canola | plasma membrane | 17.99 | 20.67 |
| CDY12701 | Canola | plasma membrane | 23.01 | 18.21 |
Protein Annotations
| EnsemblPlants:CDY00916 | EnsemblPlantsGene:GSBRNA2T00110912001 | GO:A0A078EIF3 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF62 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDY00916 | ProteinID:CDY00916.1 | TMHMM:TMhelix |
| UniParc:UPI0004EC247B | MapMan:13.7.2.1 | : | : | : | : |
Description
BnaC05g42840D
Coordinates
chrLK031923:-:88714..90669
Molecular Weight (calculated)
26985.0 Da
IEP (calculated)
8.730
GRAVY (calculated)
0.203
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEKNIVEEA IGDLVDNFTE AVQKNKHDTV ASRFNRLFGR EKPIHHVLGG GRSADVLLWR NKKISASFLM GATAIWVLFE WINLHFLSLV CYGLLLGMIA
101: QFVWCNASGF LNRSQSRVPR LVLPKDFFAD VGVTIGTEVN RGLLFLQDLS CRGNLKQFLM AVFGLWVAAI IGSCCNFLTV LYIGFVGAHT MPLLYERYED
201: EVDGFVDSLL MKFHSHYKKI DSGFLSRIPS GKFGFKKHD
101: QFVWCNASGF LNRSQSRVPR LVLPKDFFAD VGVTIGTEVN RGLLFLQDLS CRGNLKQFLM AVFGLWVAAI IGSCCNFLTV LYIGFVGAHT MPLLYERYED
201: EVDGFVDSLL MKFHSHYKKI DSGFLSRIPS GKFGFKKHD
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.