Factsheet for Zm00001d018781_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0142000-01	Rice	plasma membrane	73.66	72.76
TraesCS2A01G254300.1	Wheat	cytosol, peroxisome, vacuole	72.43	71.26
TraesCS2B01G267800.2	Wheat	cytosol, peroxisome, vacuole	71.6	70.45
TraesCS2D01G254800.1	Wheat	cytosol, peroxisome, vacuole	71.19	70.04
KXG34376	Sorghum	plasma membrane	89.3	69.11
Zm00001d034313_P001	Maize	cytosol, nucleus, plasma membrane	63.37	62.1
VIT_12s0028g01090.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.97	54.84
GSMUA_Achr6P04560_001	Banana	cytosol, peroxisome, plasma membrane	55.97	54.84
KRH45979	Soybean	cytosol, nucleus, plasma membrane	54.73	54.73
KRH14529	Soybean	cytosol, peroxisome, plasma membrane	55.14	54.69
KRH73588	Soybean	plasma membrane	53.91	53.47
GSMUA_Achr9P10200_001	Banana	cytosol, peroxisome, plasma membrane	52.67	52.89
PGSC0003DMT400002449	Potato	cytosol, nucleus, plasma membrane	53.09	50.79
KRG99024	Soybean	plasma membrane	54.32	50.0
Solyc12g006290.1.1	Tomato	nucleus	46.91	48.93
Solyc07g044880.2.1	Tomato	mitochondrion	28.4	48.59
CDY00916	Canola	plasma membrane	45.68	46.44
Bra029827.1-P	Field mustard	plasma membrane	44.44	45.19
CDY08616	Canola	plasma membrane	44.44	45.19
HORVU2Hr1G060770.16	Barley	plasma membrane	70.78	44.91
AT3G10260.3	Thale cress	plasma membrane	48.97	44.57
PGSC0003DMT400074138	Potato	plasma membrane	48.56	39.33
Zm00001d012776_P001	Maize	extracellular	37.04	35.57
Zm00001d043551_P003	Maize	plasma membrane	37.45	35.41
Zm00001d038768_P001	Maize	extracellular, mitochondrion	36.63	35.04
Zm00001d020729_P001	Maize	plasma membrane	13.58	34.74
CDX82165	Canola	endoplasmic reticulum, peroxisome, plasma membrane, plastid	35.39	34.68
Zm00001d016041_P001	Maize	extracellular	32.51	34.35
CDY56712	Canola	mitochondrion	48.97	33.52
Zm00001d008982_P001	Maize	cytosol, nucleus, plasma membrane	38.27	33.33
Zm00001d038910_P001	Maize	plasma membrane	30.86	33.04
Zm00001d037453_P001	Maize	cytosol, peroxisome, plasma membrane	35.39	32.95
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	34.16	32.94
Zm00001d026575_P001	Maize	mitochondrion, peroxisome, plasma membrane, plastid, vacuole	26.34	32.32
Zm00001d001901_P002	Maize	plasma membrane	25.93	31.82
Zm00001d039316_P001	Maize	cytosol, nucleus, plasma membrane	39.09	31.05
Zm00001d020229_P001	Maize	plasma membrane	19.34	30.92
Zm00001d011631_P001	Maize	golgi, peroxisome, plasma membrane	26.75	29.41
Zm00001d008590_P001	Maize	plastid	16.05	29.32
Zm00001d047517_P001	Maize	peroxisome	25.1	26.75
Zm00001d042846_P001	Maize	plasma membrane	21.4	24.76
Zm00001d039213_P001	Maize	golgi, plasma membrane, plastid	18.11	18.8

Protein Annotations

EntrezGene:100283096	MapMan:13.7.2.1	UniProt:B6SS42	EMBL:EU955557	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003388	ProteinID:ONM51279.1	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF93
InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI00001AB931	EnsemblPlantsGene:Zm00001d018781	EnsemblPlants:Zm00001d018781_P001	EnsemblPlants:Zm00001d018781_T001
SEG:seg	:	:	:	:	:

Description

Seed maturation protein

Coordinates

chr7:+:5083804..5085903

Molecular Weight (calculated)

26624.3 Da

IEP (calculated)

7.970

GRAVY (calculated)

0.230

Length

243 amino acids

Sequence
(BLAST)

001: MPEHSENAAA DLMGNIMETI AENLPRQKSV RFDDGDGSSI SEQAKKLFGG GESRKKSVHH VLGGGKSADV LLWRNKKISS SVLGVATLVW VFFEWLDYHF
101: LTILCFMLAL GMAVQFAWSI FSSSVPRVQL PEELFASAGA AAGAQVNRAL GFLQDVACGR DLKRLVIVIA GFFAAAVVGS FCNLLTVIYI GFVCAHTLPV
201: LYERYQDQVD EFLYNMLGLV QSQYSKLDSK GILKGGVKFR KSD

Best Arabidopsis Sequence Match ( AT3G10260.1 )
(BLAST)

001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE

Arabidopsis Description

Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.