Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 97.17 | 97.17 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 97.17 | 97.17 |
| Os07t0142000-01 | Rice | plasma membrane | 78.95 | 79.27 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 70.45 | 71.6 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 65.59 | 62.55 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 94.33 | 60.84 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 60.73 | 60.48 |
| KXG34376 | Sorghum | plasma membrane | 73.68 | 57.96 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 56.68 | 57.61 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 55.47 | 55.92 |
| KRH73588 | Soybean | plasma membrane | 54.66 | 55.1 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 53.44 | 54.55 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 53.44 | 53.23 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 54.25 | 52.76 |
| KRG99024 | Soybean | plasma membrane | 56.28 | 52.65 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 29.96 | 52.11 |
| Solyc12g006290.1.1 | Tomato | nucleus | 45.75 | 48.5 |
| Bra029827.1-P | Field mustard | plasma membrane | 46.56 | 48.12 |
| CDY08616 | Canola | plasma membrane | 46.56 | 48.12 |
| CDY00916 | Canola | plasma membrane | 45.75 | 47.28 |
| AT3G10260.3 | Thale cress | plasma membrane | 48.18 | 44.57 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 48.18 | 39.67 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 40.08 | 39.13 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 39.27 | 38.96 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 33.2 | 35.04 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 36.44 | 34.62 |
| TraesCS1B01G099200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 34.82 | 34.4 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 39.68 | 34.27 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 29.96 | 33.79 |
| CDY56712 | Canola | mitochondrion | 48.18 | 33.52 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 33.6 | 33.47 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 25.91 | 32.16 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 28.74 | 31.28 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 28.34 | 29.54 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G267800.2 | EnsemblPlantsGene:TraesCS2B01G267800 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF93 |
| PFAM:PF02453 | PFscan:PS50845 | TMHMM:TMhelix | MapMan:13.7.2.1 | : | : |
Description
No Description!
Coordinates
chr2B:+:360981446..360982643
Molecular Weight (calculated)
27186.1 Da
IEP (calculated)
7.699
GRAVY (calculated)
0.228
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHSENAAE NMMSGIMDAI ADKLPKQKSV RFDDEGSISG QAKKLFGGHK SVHHILGGGE SADVLLWRNK KISSSVLAVA TAAWVFFEWL DYHFLTIVSF
101: VLVLGMVVQF GWSSFAGMLN GSPSNVPRVE LPEELFANIG AAVGAQVNKF LGSLQDVSCG RDLKQFLMVI AGFIVTAFIG SWFSLITVIY IGFVCAHTLP
201: VFYERYHDQV DEVLYNMLGL IGSQYQKLDK GVLSKMPKGN LKLRKSQ
101: VLVLGMVVQF GWSSFAGMLN GSPSNVPRVE LPEELFANIG AAVGAQVNKF LGSLQDVSCG RDLKQFLMVI AGFIVTAFIG SWFSLITVIY IGFVCAHTLP
201: VFYERYHDQV DEVLYNMLGL IGSQYQKLDK GVLSKMPKGN LKLRKSQ
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.