Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 100.0 | 100.0 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 97.69 | 97.69 |
| HORVU7Hr1G081290.4 | Barley | plastid | 82.31 | 92.64 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 98.46 | 85.33 |
| Os06t0503400-01 | Rice | plasma membrane | 84.23 | 82.64 |
| EER89811 | Sorghum | peroxisome | 78.85 | 80.08 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 77.69 | 77.39 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 51.15 | 52.78 |
| Solyc03g007740.2.1 | Tomato | nucleus | 51.15 | 52.16 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 50.77 | 51.97 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 50.0 | 51.59 |
| Solyc01g095200.2.1 | Tomato | plastid | 51.92 | 51.33 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 49.62 | 50.99 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 50.0 | 50.98 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 50.0 | 50.98 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 51.92 | 50.94 |
| KRH59988 | Soybean | mitochondrion | 49.62 | 50.79 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 49.23 | 50.59 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 31.15 | 50.31 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 48.46 | 50.2 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 48.46 | 50.2 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 48.46 | 50.2 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 51.92 | 50.0 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 48.08 | 50.0 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 47.69 | 49.8 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 51.54 | 49.63 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 47.69 | 49.6 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 48.08 | 49.02 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 46.92 | 48.8 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 46.92 | 48.61 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 46.92 | 48.61 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 49.62 | 48.31 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 16.15 | 48.28 |
| KRH40357 | Soybean | endoplasmic reticulum | 47.69 | 48.25 |
| Bra000739.1-P | Field mustard | cytosol | 49.23 | 47.94 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 48.46 | 47.91 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 46.15 | 47.81 |
| AT4G11220.1 | Thale cress | nucleus | 49.62 | 47.6 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 46.15 | 47.43 |
| Bra019285.1-P | Field mustard | cytosol | 48.85 | 47.39 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 50.0 | 47.27 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 45.38 | 47.2 |
| KRH00872 | Soybean | endoplasmic reticulum | 46.92 | 47.1 |
| Bra013717.1-P | Field mustard | nucleus | 50.0 | 47.1 |
| CDY10954 | Canola | cytosol | 48.85 | 47.04 |
| KRH06560 | Soybean | endoplasmic reticulum | 46.15 | 46.88 |
| Bra010539.1-P | Field mustard | cytosol | 48.46 | 46.84 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 46.15 | 46.69 |
| AT4G23630.2 | Thale cress | nucleus | 49.23 | 46.55 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 49.23 | 46.38 |
| CDY24806 | Canola | cytosol | 48.85 | 46.35 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 45.0 | 46.06 |
| CDY41666 | Canola | cytosol | 48.46 | 45.65 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 44.23 | 45.28 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 43.85 | 44.88 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 43.85 | 44.88 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 43.85 | 44.71 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 43.46 | 44.66 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 46.15 | 44.28 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 48.46 | 44.06 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 40.38 | 42.0 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 48.85 | 40.45 |
| CDY05135 | Canola | mitochondrion | 48.08 | 39.94 |
| TraesCS1B01G099200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 38.08 | 39.6 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 36.54 | 39.09 |
| Bra037369.1-P | Field mustard | cytosol | 36.54 | 39.09 |
| CDY48510 | Canola | cytosol | 36.54 | 39.09 |
| AT4G01230.2 | Thale cress | cytosol | 35.0 | 37.3 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 30.77 | 36.53 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 34.62 | 36.44 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 36.15 | 36.29 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.31 | 35.9 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 24.62 | 35.56 |
| CDY62522 | Canola | cytosol | 10.38 | 33.75 |
| Bra035242.1-P | Field mustard | cytosol | 25.77 | 33.5 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 29.23 | 33.48 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 7.69 | 33.33 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 25.38 | 33.17 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 30.38 | 32.24 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 29.23 | 32.07 |
| KRG91601 | Soybean | mitochondrion | 40.0 | 30.59 |
| CDX89122 | Canola | extracellular, mitochondrion | 17.31 | 29.41 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G241100.1 | EnsemblPlantsGene:TraesCS7B01G241100 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF73 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr7B:+:448724051..448728049
Molecular Weight (calculated)
28092.4 Da
IEP (calculated)
7.302
GRAVY (calculated)
0.138
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAEETVA APPPTPAAPA EGAPPLSAEP PASTDASPEK AAPPAPAPDT TVRSRGFRLL GEDTSVHKVL GGGKTADVLL WKDKKTTAVV IGGTTVIWVL
101: FEVLDYHLLT LLSHVMIGVL AILFVWSKAM TFIKKSPPDI PVVEIPEDLA VNVSRALRSD VNRSLHLLRE IAMGHDLKKF LGVIAGLWVL SEVGSCCDFL
201: TLIYIAVLMI HTVPILYDKY QDKVDHFAGK AHTEACKHYE VLDQKVLSKI PRGPAKTKKT
101: FEVLDYHLLT LLSHVMIGVL AILFVWSKAM TFIKKSPPDI PVVEIPEDLA VNVSRALRSD VNRSLHLLRE IAMGHDLKKF LGVIAGLWVL SEVGSCCDFL
201: TLIYIAVLMI HTVPILYDKY QDKVDHFAGK AHTEACKHYE VLDQKVLSKI PRGPAKTKKT
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.