Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 92.15 | 87.45 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 87.6 | 79.4 |
| KXG24074 | Sorghum | plasma membrane | 87.19 | 79.03 |
| Zm00001d012393_P004 | Maize | extracellular | 88.02 | 78.89 |
| Os04t0165400-01 | Rice | cytosol | 88.84 | 76.79 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 75.62 | 68.54 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 75.21 | 67.91 |
| PGSC0003DMT400091443 | Potato | cytosol | 33.06 | 64.52 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 67.77 | 60.97 |
| PGSC0003DMT400051743 | Potato | plastid | 66.12 | 59.48 |
| CDY12450 | Canola | plasma membrane | 66.12 | 59.26 |
| CDY52184 | Canola | plastid | 66.12 | 59.26 |
| Bra039874.1-P | Field mustard | plastid | 64.88 | 59.25 |
| PGSC0003DMT400048758 | Potato | plastid | 65.29 | 59.18 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 64.05 | 58.05 |
| AT3G59500.1 | Thale cress | plasma membrane | 64.05 | 57.62 |
| KRH18296 | Soybean | endoplasmic reticulum | 64.05 | 57.62 |
| KRG93809 | Soybean | plastid | 63.22 | 56.88 |
| CDY00621 | Canola | plastid | 61.16 | 56.27 |
| CDX98378 | Canola | plasma membrane | 62.4 | 56.13 |
| CDX67799 | Canola | plasma membrane | 61.98 | 55.76 |
| KRH45179 | Soybean | plastid | 62.4 | 55.31 |
| CDX89024 | Canola | plasma membrane | 60.74 | 55.26 |
| Bra003379.1-P | Field mustard | plastid | 61.98 | 55.15 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 60.74 | 55.06 |
| Bra014538.1-P | Field mustard | plastid | 60.33 | 54.89 |
| Solyc06g083630.2.1 | Tomato | plastid | 66.12 | 54.61 |
| CDX71903 | Canola | plastid | 34.3 | 48.82 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 67.77 | 48.66 |
| VIT_11s0037g00310.t01 | Wine grape | cytosol | 53.31 | 47.43 |
| Bra007455.1-P | Field mustard | cytosol, golgi, mitochondrion, plasma membrane | 35.95 | 46.77 |
| Solyc07g005670.1.1 | Tomato | extracellular | 51.24 | 45.59 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 64.46 | 45.35 |
| CDY05995 | Canola | plasma membrane | 33.06 | 43.96 |
| KRH01468 | Soybean | plasma membrane | 63.64 | 39.39 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G595700.1 | EnsemblPlantsGene:TraesCS2D01G595700 | InterPro:Yif1_fam | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 | PFAM:PF03878 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:648746992..648748080
Molecular Weight (calculated)
27839.1 Da
IEP (calculated)
9.873
GRAVY (calculated)
0.061
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MYDNYRNPHP PGMQIPPPNP QPGPYDNPLY GASSGLIKTG LGVYGEKFLG SSSEFMQSNI SRYFSNPQYY FHVNDQYVRN KLKVILFPFL HRGHWTRISE
101: PVGGRLSYKP PMYDINAPDL YIPFMAFGSF IILAGFTLGF MGKFTPEAIN LQFTRGLIGW AGYLFAGLSL AIVARLLWSY SYYVMMPWMS MCMGIFLVRT
201: MKRVIFTEMR GSERHSTRQH YFLLFMAIVQ FPLFFWLGSI GA
101: PVGGRLSYKP PMYDINAPDL YIPFMAFGSF IILAGFTLGF MGKFTPEAIN LQFTRGLIGW AGYLFAGLSL AIVARLLWSY SYYVMMPWMS MCMGIFLVRT
201: MKRVIFTEMR GSERHSTRQH YFLLFMAIVQ FPLFFWLGSI GA
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Arabidopsis Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [cytosol,plasma membrane,plastid]
SUBAcon: [cytosol,plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.