Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89024 | Canola | plasma membrane | 94.68 | 93.61 |
| CDX67799 | Canola | plasma membrane | 94.3 | 92.19 |
| AT3G59500.1 | Thale cress | plasma membrane | 93.92 | 91.82 |
| CDX98378 | Canola | plasma membrane | 93.16 | 91.08 |
| CDY52184 | Canola | plastid | 86.69 | 84.44 |
| CDY12450 | Canola | plasma membrane | 85.93 | 83.7 |
| KRH18296 | Soybean | endoplasmic reticulum | 80.61 | 78.81 |
| KRG93809 | Soybean | plastid | 80.23 | 78.44 |
| PGSC0003DMT400051743 | Potato | plastid | 79.47 | 77.7 |
| PGSC0003DMT400048758 | Potato | plastid | 78.33 | 77.15 |
| KRH45179 | Soybean | plastid | 79.09 | 76.19 |
| Solyc06g083630.2.1 | Tomato | plastid | 79.47 | 71.33 |
| CDX71903 | Canola | plastid | 46.01 | 71.18 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 71.48 | 70.15 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 69.58 | 68.54 |
| CDY05995 | Canola | plasma membrane | 47.15 | 68.13 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 67.3 | 66.29 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 67.3 | 66.29 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 67.3 | 66.29 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 66.92 | 65.92 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 65.4 | 64.42 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 82.13 | 64.09 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 65.02 | 64.04 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 65.02 | 64.04 |
| KXG24074 | Sorghum | plasma membrane | 65.02 | 64.04 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 64.64 | 63.67 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 64.64 | 63.67 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 61.22 | 63.14 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 61.22 | 63.14 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 63.88 | 62.92 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 63.88 | 62.92 |
| Zm00001d012393_P004 | Maize | extracellular | 63.88 | 62.22 |
| Os04t0165400-01 | Rice | cytosol | 66.16 | 62.14 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 63.12 | 61.71 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 56.27 | 61.16 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 78.71 | 60.17 |
| HORVU1Hr1G028870.1 | Barley | plastid | 33.84 | 57.79 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 28.52 | 56.82 |
| KRH01468 | Soybean | plasma membrane | 78.33 | 52.69 |
| Zm00001d053686_P001 | Maize | cytosol | 64.64 | 51.67 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 65.4 | 50.74 |
Protein Annotations
| EnsemblPlants:CDY00621 | EnsemblPlantsGene:GSBRNA2T00110414001 | GO:A0A078EHN8 | InterPro:Yif1_fam | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 |
| PFAM:PF03878 | ProteinID:CDY00621 | ProteinID:CDY00621.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDF88E |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC04g23040D
Coordinates
chrLK031920:+:886986..888336
Molecular Weight (calculated)
29667.5 Da
IEP (calculated)
9.510
GRAVY (calculated)
0.304
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MYNNNNMTQA VPQPNPFGNP FSGPGSGLIR SGLGAYGEKI FGSSSEYVQS NITRYFSDPQ YYFQVNDQYV RNKLKIVLLP FLHRGHWARI SEPVGGRLSY
101: KPPIYDINAP DLYIPLMAFG TYLVLAGLSL GLYGKFSPEA LNWLFVKGMV GWFMQVMLLK MTLFSLGSGE APLLDIVAYA GYAFTGLCLA VLGKIMWGYS
201: YYVLIPWTCL CTGVFLVKTM KRVLFAEARS YDSSRRHYLL IFVALAQFPL LIWLGNISVN WLF
101: KPPIYDINAP DLYIPLMAFG TYLVLAGLSL GLYGKFSPEA LNWLFVKGMV GWFMQVMLLK MTLFSLGSGE APLLDIVAYA GYAFTGLCLA VLGKIMWGYS
201: YYVLIPWTCL CTGVFLVKTM KRVLFAEARS YDSSRRHYLL IFVALAQFPL LIWLGNISVN WLF
001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF
Arabidopsis Description
HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.