CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18296	Soybean	endoplasmic reticulum	98.88	98.88
KRH45179	Soybean	plastid	85.87	84.62
CDX67799	Canola	plasma membrane	82.16	82.16
CDX98378	Canola	plasma membrane	81.78	81.78
Bra003379.1-P	Field mustard	plastid	82.16	81.25
AT3G59500.1	Thale cress	plasma membrane	81.04	81.04
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	80.3	80.3
CDY00621	Canola	plastid	78.44	80.23
CDX89024	Canola	plasma membrane	79.18	80.08
PGSC0003DMT400048758	Potato	plastid	78.81	79.4
Bra014538.1-P	Field mustard	plastid	78.44	79.32
Bra039874.1-P	Field mustard	plastid	77.7	78.87
CDY12450	Canola	plasma membrane	78.81	78.52
CDY52184	Canola	plastid	78.81	78.52
PGSC0003DMT400051743	Potato	plastid	77.32	77.32
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	72.49	72.76
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	72.12	72.66
Solyc06g083630.2.1	Tomato	plastid	77.32	70.99
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	66.91	67.42
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	66.91	67.42
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	66.91	67.42
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	66.54	67.04
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	83.64	66.77
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	46.1	66.67
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	65.43	65.92
EES04687	Sorghum	cytosol, plasma membrane, plastid	65.43	65.92
EER93147	Sorghum	cytosol, plasma membrane, plastid	64.68	65.17
TraesCS7A01G400200.1	Wheat	plasma membrane	63.57	64.04
TraesCS7B01G300300.1	Wheat	plasma membrane	63.57	64.04
TraesCS2A01G001100.1	Wheat	plasma membrane	60.59	63.92
TraesCS2D01G001300.1	Wheat	plasma membrane	60.59	63.92
TraesCS7D01G394000.1	Wheat	plasma membrane	63.2	63.67
KXG24074	Sorghum	plasma membrane	62.83	63.3
TraesCS2D01G595700.1	Wheat	plasma membrane	56.88	63.22
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	62.08	62.55
Os04t0165400-01	Rice	cytosol	65.06	62.5
TraesCS2B01G022800.1	Wheat	plasma membrane	62.45	62.45
CDX71903	Canola	plastid	39.41	62.35
Zm00001d012393_P004	Maize	extracellular	62.45	62.22
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	78.81	61.63
CDY05995	Canola	plasma membrane	41.64	61.54
HORVU1Hr1G028870.1	Barley	plastid	34.2	59.74
KRH01468	Soybean	plasma membrane	85.5	58.82
HORVU7Hr1G094050.2	Barley	cytosol	27.88	56.82
Zm00001d053686_P001	Maize	cytosol	64.68	52.89
HORVU7Hr1G094010.8	Barley	mitochondrion	63.94	50.74

Protein Annotations

EntrezGene:100803636	MapMan:35.2	EMBL:ACUP02011630	EnsemblPlantsGene:GLYMA_19G042700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005793	GO:GO:0005794
GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030134
GO:GO:0030173	UniProt:I1N6L1	EnsemblPlants:KRG93809	ProteinID:KRG93809	ProteinID:KRG93809.1	PFAM:PF03878
PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	TMHMM:TMhelix	UniParc:UPI000233E8F6	InterPro:Yif1_fam	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:6236487..6239735

Molecular Weight (calculated)

29963.0 Da

IEP (calculated)

9.639

GRAVY (calculated)

0.383

Length

269 amino acids

Sequence
(BLAST)

001: MYGNVGSQPG VQQSQTSLPP NPFGSAFNVA GSGLIRGGLG AYGGKILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVKNKL KVVLLPFLHR GHWTRITEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVI LAGLSLGLHR KFSPEALNLL FIKGLLGWFM QAALLKVTLL SLGSGEAPLL DIIAYAGYTF TGICLAVLGR
201: IILGYSYYFL MPWTCLCMGV FLVKTMKRVL FAEVRSYDSS RHHYLLLFIA LVQFPLFTWL GNITINWLL

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.