Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039874.1-P | Field mustard | plastid | 94.42 | 95.85 |
| CDY52184 | Canola | plastid | 95.91 | 95.56 |
| CDY12450 | Canola | plasma membrane | 95.17 | 94.81 |
| AT3G59500.1 | Thale cress | plasma membrane | 86.99 | 86.99 |
| PGSC0003DMT400048758 | Potato | plastid | 82.53 | 83.15 |
| PGSC0003DMT400051743 | Potato | plastid | 82.53 | 82.53 |
| KRH18296 | Soybean | endoplasmic reticulum | 81.04 | 81.04 |
| KRG93809 | Soybean | plastid | 80.3 | 80.3 |
| KRH45179 | Soybean | plastid | 80.67 | 79.49 |
| Solyc06g083630.2.1 | Tomato | plastid | 82.16 | 75.43 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 73.98 | 74.25 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 72.12 | 72.66 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 65.43 | 69.02 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 65.43 | 69.02 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 68.4 | 68.91 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 68.4 | 68.91 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 68.4 | 68.91 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 68.03 | 68.54 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 85.13 | 67.95 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 60.97 | 67.77 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 67.29 | 67.29 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 66.54 | 67.04 |
| KXG24074 | Sorghum | plasma membrane | 66.54 | 67.04 |
| Os04t0165400-01 | Rice | cytosol | 69.52 | 66.79 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 66.17 | 66.67 |
| Zm00001d012393_P004 | Maize | extracellular | 66.54 | 66.3 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 65.8 | 66.29 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 65.8 | 66.29 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 63.94 | 64.42 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 63.94 | 64.42 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 63.57 | 64.04 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 81.41 | 63.66 |
| HORVU1Hr1G028870.1 | Barley | plastid | 35.32 | 61.69 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 28.62 | 58.33 |
| KRH01468 | Soybean | plasma membrane | 80.67 | 55.5 |
| Zm00001d053686_P001 | Maize | cytosol | 66.91 | 54.71 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 64.31 | 51.03 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839973 | UniProt:A0A178WAJ0 | ProteinID:AEE31289.1 | ProteinID:AEE31290.1 | ArrayExpress:AT1G30890 |
| EnsemblPlantsGene:AT1G30890 | RefSeq:AT1G30890 | TAIR:AT1G30890 | RefSeq:AT1G30890-TAIR-G | EnsemblPlants:AT1G30890.1 | TAIR:AT1G30890.1 |
| EMBL:AY039953 | EMBL:AY086444 | EMBL:AY113904 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005793 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0006888 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030134 | GO:GO:0030173 |
| RefSeq:NP_001077633.1 | RefSeq:NP_564367.1 | ProteinID:OAP14393.1 | PFAM:PF03878 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 | UniProt:Q94BQ9 | TMHMM:TMhelix | UniParc:UPI00000A9F84 |
| InterPro:Yif1_fam | SEG:seg | : | : | : | : |
Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
Coordinates
chr1:+:10994243..10996223
Molecular Weight (calculated)
30029.9 Da
IEP (calculated)
9.412
GRAVY (calculated)
0.268
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.