CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93147	Sorghum	cytosol, plasma membrane, plastid	95.13	95.13
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	90.26	90.26
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	90.26	90.26
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	90.26	90.26
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	89.89	89.89
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	88.39	88.39
TraesCS7A01G400200.1	Wheat	plasma membrane	85.39	85.39
TraesCS7B01G300300.1	Wheat	plasma membrane	85.02	85.02
TraesCS7D01G394000.1	Wheat	plasma membrane	84.64	84.64
HORVU1Hr1G028870.1	Barley	plastid	44.57	77.27
Zm00001d053686_P001	Maize	cytosol	94.01	76.29
HORVU7Hr1G094050.2	Barley	cytosol	37.08	75.0
HORVU7Hr1G094010.8	Barley	mitochondrion	85.77	67.55
Bra039874.1-P	Field mustard	plastid	66.29	66.79
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	67.04	66.54
CDY52184	Canola	plastid	66.67	65.93
KRH18296	Soybean	endoplasmic reticulum	66.29	65.8
Bra003379.1-P	Field mustard	plastid	66.67	65.44
CDX98378	Canola	plasma membrane	65.92	65.43
KRG93809	Soybean	plastid	65.92	65.43
CDX67799	Canola	plasma membrane	65.92	65.43
PGSC0003DMT400051743	Potato	plastid	65.92	65.43
CDY12450	Canola	plasma membrane	65.92	65.19
PGSC0003DMT400048758	Potato	plastid	65.17	65.17
CDX89024	Canola	plasma membrane	64.79	65.04
AT3G59500.1	Thale cress	plasma membrane	65.17	64.68
Bra014538.1-P	Field mustard	plastid	64.42	64.66
CDY00621	Canola	plastid	63.67	64.64
PGSC0003DMT400091443	Potato	cytosol	28.84	62.1
KRH45179	Soybean	plastid	63.3	61.9
KXG24074	Sorghum	plasma membrane	61.42	61.42
Solyc06g083630.2.1	Tomato	plastid	66.29	60.41
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	40.45	58.06
VIT_11s0037g00310.t01	Wine grape	cytosol	56.18	55.15
CDY05995	Canola	plasma membrane	37.45	54.95
CDX71903	Canola	plastid	33.33	52.35
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	65.54	51.93
Solyc07g005670.1.1	Tomato	extracellular	52.43	51.47
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	65.54	50.87
KRH01468	Soybean	plasma membrane	64.42	43.99

Protein Annotations

MapMan:35.2	EntrezGene:8082889	UniProt:C5XXF6	EnsemblPlants:EES04687	ProteinID:EES04687	ProteinID:EES04687.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0005793	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030134	GO:GO:0030173	ProteinID:OQU84560.1	PFAM:PF03878	PANTHER:PTHR14083
PANTHER:PTHR14083:SF6	EnsemblPlantsGene:SORBI_3004G077900	unigene:Sbi.8496	TMHMM:TMhelix	UniParc:UPI0001A8574C	RefSeq:XP_002451711.1
InterPro:Yif1_fam	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:6406159..6409398

Molecular Weight (calculated)

29820.6 Da

IEP (calculated)

9.681

GRAVY (calculated)

0.267

Length

267 amino acids

Sequence
(BLAST)

001: MAAMNTDMGG LGGRPTNQQA NPFGTALHGA GPGLIRTGLE AYGGRFLDSS SEFMQSNITQ YLSDPQYYFQ VNSQYVRNKL KVILFPFLHR GHWTRITEPV
101: GGRLSYKPPV QDINAPDLYI PLMAFGTYIV VAGYALGVLG RFTPEALTLQ FSKGILGWFL QVILIKGLLY SLGSSEAPLL DIVAYAGYGF AGTSLAMLAR
201: IFWSYLYYFI MPWFCICTGV FLVKTMKRVL LGGPRSYERH PSRNHYFLLF LAVVQFPMLF WLGNISG

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.