Factsheet for PGSC0003DMT400091443

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
extracellular 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G028870.1	Barley	plastid	62.1	50.0
Solyc07g005670.1.1	Tomato	extracellular	87.9	40.07
VIT_11s0037g00310.t01	Wine grape	cytosol	72.58	33.09
TraesCS2D01G595700.1	Wheat	plasma membrane	64.52	33.06
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	68.55	31.84
TraesCS2D01G001300.1	Wheat	plasma membrane	65.32	31.76
TraesCS2A01G001100.1	Wheat	plasma membrane	65.32	31.76
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	67.74	31.34
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	66.94	31.09
PGSC0003DMT400048758	Potato	plastid	66.94	31.09
PGSC0003DMT400051743	Potato	plastid	66.13	30.48
TraesCS7B01G300300.1	Wheat	plasma membrane	65.32	30.34
TraesCS7D01G394000.1	Wheat	plasma membrane	65.32	30.34
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	64.52	29.96
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	64.52	29.96
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	64.52	29.96
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	64.52	29.96
TraesCS7A01G400200.1	Wheat	plasma membrane	64.52	29.96
TraesCS2B01G022800.1	Wheat	plasma membrane	64.52	29.74
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	62.9	29.21
Os04t0165400-01	Rice	cytosol	65.32	28.93
Zm00001d012393_P004	Maize	extracellular	62.9	28.89
EES04687	Sorghum	cytosol, plasma membrane, plastid	62.1	28.84
KXG24074	Sorghum	plasma membrane	62.1	28.84
EER93147	Sorghum	cytosol, plasma membrane, plastid	62.1	28.84
HORVU7Hr1G094010.8	Barley	mitochondrion	65.32	23.89
Zm00001d053686_P001	Maize	cytosol	61.29	23.1
HORVU7Hr1G094050.2	Barley	cytosol	3.23	3.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400091443	EnsemblPlantsGene:PGSC0003DMG400041014	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Yif1_fam
PANTHER:PTHR14083	PANTHER:PTHR14083:SF3	PFAM:PF03878	PGSC:PGSC0003DMG400041014	TMHMM:TMhelix	UniParc:UPI0002954D70
UniProt:M1DMM0	MapMan:35.2	:	:	:	:

Description

Protein YIF1A [Source:PGSC_GENE;Acc:PGSC0003DMG400041014]

Coordinates

chr7:-:928711..930165

Molecular Weight (calculated)

13978.9 Da

IEP (calculated)

8.686

GRAVY (calculated)

0.025

Length

124 amino acids

Sequence
(BLAST)

001: MLLYGAGSDL IKSELGAYGE KVLGSSSSYV QNNIGRYISN PQYYFQVNED YVKNKLKVIL FPFLHKGHWM RAGDMVGGEF SFKPPIYDIN APDLYIPMMA
101: FGTYLVLAGY FLGITTNFNK HVTV

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [cytosol,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.