Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 82.86 | 90.98 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 82.86 | 90.98 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 85.71 | 89.22 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 76.79 | 88.84 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 84.64 | 88.76 |
| KXG24074 | Sorghum | plasma membrane | 84.64 | 88.76 |
| Zm00001d012393_P004 | Maize | extracellular | 84.29 | 87.41 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 73.57 | 77.15 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 72.86 | 76.12 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 66.79 | 69.52 |
| CDY52184 | Canola | plastid | 66.07 | 68.52 |
| Bra039874.1-P | Field mustard | plastid | 64.64 | 68.3 |
| CDY12450 | Canola | plasma membrane | 65.71 | 68.15 |
| AT3G59500.1 | Thale cress | plasma membrane | 65.36 | 68.03 |
| CDX98378 | Canola | plasma membrane | 64.29 | 66.91 |
| CDX67799 | Canola | plasma membrane | 63.93 | 66.54 |
| PGSC0003DMT400048758 | Potato | plastid | 63.21 | 66.29 |
| CDY00621 | Canola | plastid | 62.14 | 66.16 |
| Bra003379.1-P | Field mustard | plastid | 63.93 | 65.81 |
| KRH18296 | Soybean | endoplasmic reticulum | 63.21 | 65.8 |
| PGSC0003DMT400051743 | Potato | plastid | 62.86 | 65.43 |
| PGSC0003DMT400091443 | Potato | cytosol | 28.93 | 65.32 |
| KRG93809 | Soybean | plastid | 62.5 | 65.06 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 61.79 | 64.79 |
| CDX89024 | Canola | plasma membrane | 61.43 | 64.66 |
| Bra014538.1-P | Field mustard | plastid | 61.07 | 64.29 |
| KRH45179 | Soybean | plastid | 61.79 | 63.37 |
| Solyc06g083630.2.1 | Tomato | plastid | 62.86 | 60.07 |
| Bra007455.1-P | Field mustard | cytosol, golgi, mitochondrion, plasma membrane | 38.21 | 57.53 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 67.14 | 55.79 |
| CDX71903 | Canola | plastid | 33.57 | 55.29 |
| CDY05995 | Canola | plasma membrane | 35.36 | 54.4 |
| VIT_11s0037g00310.t01 | Wine grape | cytosol | 52.5 | 54.04 |
| Solyc07g005670.1.1 | Tomato | extracellular | 51.79 | 53.31 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 62.5 | 50.87 |
| KRH01468 | Soybean | plasma membrane | 62.14 | 44.5 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4335045 | ProteinID:BAF14046.1 | ProteinID:BAS87869.1 | ProteinID:CAE02114.2 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005793 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0030134 | GO:GO:0030173 | EnsemblPlantsGene:Os04g0165400 | EnsemblPlants:Os04t0165400-01 | PFAM:PF03878 | PANTHER:PTHR14083 |
| PANTHER:PTHR14083:SF6 | UniProt:Q7XS61 | TMHMM:TMhelix | UniParc:UPI000021C843 | RefSeq:XP_015633881.1 | InterPro:Yif1_fam |
| SEG:seg | : | : | : | : | : |
Description
Hrf1 family protein. (Os04t0165400-01)
Coordinates
chr4:-:4441922..4443953
Molecular Weight (calculated)
31504.7 Da
IEP (calculated)
9.863
GRAVY (calculated)
0.196
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MYNNYGNSPG MQMPPIGQMP PAAGQMPSAN PQPGQFGNPF YGASSGLIKT GLGAYGEKFL GSSSEFMQSN INRYFSNPQY YFHVNDQYVR NKLKVILFPF
101: LHRGHWTRIS EPVGGRLSYK PPIYDINAPD LYIPFMAFGS FIILAGFTLG FMGKFTPEAI NLQFSRGLIG WALQIVILKG LLYSMGGGEV PLLDLVAYGG
201: YLFAGLSLAV ISRLLWAYSY FVMMPWMSLC MGVFLVRTMK RVLFTEMRSS ERHSTRQHYF LLFLAISQFP LFFWLGNIGA
101: LHRGHWTRIS EPVGGRLSYK PPIYDINAPD LYIPFMAFGS FIILAGFTLG FMGKFTPEAI NLQFSRGLIG WALQIVILKG LLYSMGGGEV PLLDLVAYGG
201: YLFAGLSLAV ISRLLWAYSY FVMMPWMSLC MGVFLVRTMK RVLFTEMRSS ERHSTRQHYF LLFLAISQFP LFFWLGNIGA
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Arabidopsis Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.