Factsheet for Bra039874.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52184	Canola	plastid	100.0	98.15
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	95.85	94.42
Bra003379.1-P	Field mustard	plastid	87.17	84.93
Bra014538.1-P	Field mustard	plastid	84.15	83.83
PGSC0003DMT400051743	Potato	plastid	81.89	80.67
PGSC0003DMT400048758	Potato	plastid	80.75	80.15
KRH18296	Soybean	endoplasmic reticulum	79.62	78.44
KRG93809	Soybean	plastid	78.87	77.7
KRH45179	Soybean	plastid	79.62	77.29
Solyc06g083630.2.1	Tomato	plastid	81.51	73.72
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	72.08	71.27
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	71.32	70.79
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	49.06	69.89
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	68.3	67.79
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	68.3	67.79
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	68.3	67.79
TraesCS2D01G001300.1	Wheat	plasma membrane	64.91	67.45
TraesCS2A01G001100.1	Wheat	plasma membrane	64.91	67.45
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	67.92	67.42
EES04687	Sorghum	cytosol, plasma membrane, plastid	66.79	66.29
EER93147	Sorghum	cytosol, plasma membrane, plastid	66.04	65.54
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	83.02	65.28
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	65.66	65.17
TraesCS2D01G595700.1	Wheat	plasma membrane	59.25	64.88
KXG24074	Sorghum	plasma membrane	65.28	64.79
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	65.28	64.79
Os04t0165400-01	Rice	cytosol	68.3	64.64
TraesCS2B01G022800.1	Wheat	plasma membrane	65.28	64.31
Zm00001d012393_P004	Maize	extracellular	65.28	64.07
TraesCS7A01G400200.1	Wheat	plasma membrane	63.77	63.3
TraesCS7B01G300300.1	Wheat	plasma membrane	63.77	63.3
TraesCS7D01G394000.1	Wheat	plasma membrane	63.4	62.92
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	80.38	61.92
HORVU1Hr1G028870.1	Barley	plastid	34.34	59.09
HORVU7Hr1G094050.2	Barley	cytosol	29.06	58.33
Zm00001d053686_P001	Maize	cytosol	66.79	53.8
KRH01468	Soybean	plasma membrane	79.25	53.71
HORVU7Hr1G094010.8	Barley	mitochondrion	64.15	50.15

Protein Annotations

EnsemblPlants:Bra039874.1	EnsemblPlants:Bra039874.1-P	EnsemblPlantsGene:Bra039874	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Yif1_fam	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	PFAM:PF03878	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002545823	UniProt:M4FFK0	MapMan:35.2	:	:	:

Description

AT1G30890 (E=3e-128) | integral membrane HRF1 family protein

Coordinates

chrA08:-:6131197..6132220

Molecular Weight (calculated)

29609.3 Da

IEP (calculated)

9.564

GRAVY (calculated)

0.295

Length

265 amino acids

Sequence
(BLAST)

001: MGPQQGMPRP PGNPQPGPFG NPFTGPASGF IRGGLGAYGE RILGSSSEYV QSNITRYFSD PQYYFQVNDQ YVRNKLKVVL FPFLHRGHWA RISEPVGGRL
101: SYKPPIYDIN APDLYIPFMA FGTYVVLAGL SLGLNGKFSP EALNWLFVKG LVGWFLQVML LKVTLLSLGS AEAPLLDIVA YGGYAFAGLC LAGFAKIMWG
201: YSYYALMPWT CLCTGVFLVK TMKRVLFAEV RSYDSSRHHY LLLFLALVQF PLLIWLGNIS VNWLF

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.