CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	97.0	97.0
Zm00001d012393_P004	Maize	extracellular	95.88	94.81
TraesCS2D01G001300.1	Wheat	plasma membrane	84.64	88.63
TraesCS2A01G001100.1	Wheat	plasma membrane	84.64	88.63
TraesCS2B01G022800.1	Wheat	plasma membrane	88.02	87.36
TraesCS2D01G595700.1	Wheat	plasma membrane	79.03	87.19
Os04t0165400-01	Rice	cytosol	88.76	84.64
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	75.66	75.66
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	75.28	75.0
AT3G59500.1	Thale cress	plasma membrane	67.42	66.91
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	67.04	66.54
CDY52184	Canola	plastid	66.29	65.56
CDX67799	Canola	plasma membrane	65.92	65.43
Bra039874.1-P	Field mustard	plastid	64.79	65.28
CDY12450	Canola	plasma membrane	65.92	65.19
CDX98378	Canola	plasma membrane	65.54	65.06
CDX89024	Canola	plasma membrane	64.79	65.04
CDY00621	Canola	plastid	64.04	65.02
Bra003379.1-P	Field mustard	plastid	65.92	64.71
PGSC0003DMT400048758	Potato	plastid	64.42	64.42
PGSC0003DMT400051743	Potato	plastid	64.79	64.31
Bra014538.1-P	Field mustard	plastid	64.04	64.29
KRH18296	Soybean	endoplasmic reticulum	64.04	63.57
KRG93809	Soybean	plastid	63.3	62.83
KRH45179	Soybean	plastid	64.04	62.64
EER93147	Sorghum	cytosol, plasma membrane, plastid	62.17	62.17
PGSC0003DMT400091443	Potato	cytosol	28.84	62.1
EES04687	Sorghum	cytosol, plasma membrane, plastid	61.42	61.42
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	41.2	59.14
Solyc06g083630.2.1	Tomato	plastid	64.79	59.04
CDY05995	Canola	plasma membrane	38.2	56.04
CDX71903	Canola	plastid	35.58	55.88
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	67.42	53.41
VIT_11s0037g00310.t01	Wine grape	cytosol	51.69	50.74
Solyc07g005670.1.1	Tomato	extracellular	51.31	50.37
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	63.67	49.42
KRH01468	Soybean	plasma membrane	64.42	43.99

Protein Annotations

EnsemblPlants:KXG24074	EnsemblPlantsGene:SORBI_3008G180900	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Yif1_fam
PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	PFAM:PF03878	ProteinID:KXG24074	ProteinID:KXG24074.1	TMHMM:TMhelix
UniParc:UPI0003C73283	UniProt:A0A1B6PEG5	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:61423544..61426181

Molecular Weight (calculated)

30469.4 Da

IEP (calculated)

9.747

GRAVY (calculated)

0.193

Length

267 amino acids

Sequence
(BLAST)

001: MYNNYGNPPG MQMPPQNSQP VQFDNPLYGA SSGLIRSGIG VYGEKFLGSS SEFMQSNINR YLSNPQYYFH VNDQYVRNKL KIILFPFFHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGSFII LSGFTLGFMG KFTPEAINLH FTRALIGWGF QLMLLKGLLY SMGGGEVPLL DLVAYGGYLF AGLSLAVVAR
201: LIWAYSYYVM MPWMSLCMGV FLVRTMKRVL FTEMRSSERH SSRQHYFLLF MAIAQFPLFF WLGSIGA

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.