Factsheet for Solyc06g083630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051743	Potato	plastid	91.13	99.26
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	75.43	82.16
Bra039874.1-P	Field mustard	plastid	73.72	81.51
CDY52184	Canola	plastid	74.74	81.11
CDX67799	Canola	plasma membrane	74.06	80.67
Bra003379.1-P	Field mustard	plastid	74.74	80.51
CDY12450	Canola	plasma membrane	74.06	80.37
AT3G59500.1	Thale cress	plasma membrane	73.72	80.3
CDX98378	Canola	plasma membrane	73.72	80.3
CDX89024	Canola	plasma membrane	72.35	79.7
CDY00621	Canola	plastid	71.33	79.47
Bra014538.1-P	Field mustard	plastid	71.67	78.95
KRH18296	Soybean	endoplasmic reticulum	71.67	78.07
KRH45179	Soybean	plastid	72.7	78.02
KRG93809	Soybean	plastid	70.99	77.32
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	68.26	74.63
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	66.21	72.66
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	84.64	72.09
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	62.46	68.54
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	62.46	68.54
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	62.46	68.54
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	62.46	68.54
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	62.12	68.16
TraesCS7A01G400200.1	Wheat	plasma membrane	61.09	67.04
TraesCS7B01G300300.1	Wheat	plasma membrane	61.09	67.04
TraesCS7D01G394000.1	Wheat	plasma membrane	61.09	67.04
TraesCS2D01G001300.1	Wheat	plasma membrane	58.02	66.67
TraesCS2A01G001100.1	Wheat	plasma membrane	58.02	66.67
EES04687	Sorghum	cytosol, plasma membrane, plastid	60.41	66.29
TraesCS2D01G595700.1	Wheat	plasma membrane	54.61	66.12
EER93147	Sorghum	cytosol, plasma membrane, plastid	60.07	65.92
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	75.77	65.88
KXG24074	Sorghum	plasma membrane	59.04	64.79
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	59.04	64.79
TraesCS2B01G022800.1	Wheat	plasma membrane	59.39	64.68
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	40.61	63.98
Zm00001d012393_P004	Maize	extracellular	58.36	63.33
CDX71903	Canola	plastid	36.52	62.94
Os04t0165400-01	Rice	cytosol	60.07	62.86
HORVU1Hr1G028870.1	Barley	plastid	32.76	62.34
CDY05995	Canola	plasma membrane	36.86	59.34
HORVU7Hr1G094050.2	Barley	cytosol	24.91	55.3
KRH01468	Soybean	plasma membrane	72.7	54.48
Solyc07g005670.1.1	Tomato	extracellular	50.51	54.41
Zm00001d053686_P001	Maize	cytosol	60.75	54.1
HORVU7Hr1G094010.8	Barley	mitochondrion	62.12	53.69

Protein Annotations

MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0005793	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030134	GO:GO:0030173	UniProt:K4CAL8	PFAM:PF03878
PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	EnsemblPlantsGene:Solyc06g083630.2	EnsemblPlants:Solyc06g083630.2.1	TMHMM:TMhelix	UniParc:UPI000276B5E0
InterPro:Yif1_fam	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:48973577..48979128

Molecular Weight (calculated)

32834.8 Da

IEP (calculated)

9.265

GRAVY (calculated)

0.228

Length

293 amino acids

Sequence
(BLAST)

001: MQASADSLPS VLQSEFQSKN PPAEMYDNLG AQSGVPRPPV NTQANPFGNA FSGGSSGFIR SGLGAYGEKI LGSSSEYVQS NISRYFSDPQ YYFQVNDQYV
101: RNKLKVVLFP FLHRGHWTRI TEPVGGRLSY KPPIFDINAP DLYIPFMAFG TYVVLAGLSL GLQGRFTPEA LNWLFIKGLV GWFLEVSLLK MTLFSLGSGE
201: APLLDIVSYA GYAFAGLSIA LLGTIIWSHS YYFLMPWTSL CMGIFLVKTM KRVLFAEVRT YDSSRHHYLL LFIALAQFPL LFWLGKISLN WFF

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.