Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 3
- plasma membrane 4
- extracellular 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048758 | Potato | plastid | 76.16 | 98.13 |
| Solyc06g083630.2.1 | Tomato | plastid | 72.09 | 84.64 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 63.66 | 81.41 |
| Bra039874.1-P | Field mustard | plastid | 61.92 | 80.38 |
| CDX67799 | Canola | plasma membrane | 62.79 | 80.3 |
| CDY52184 | Canola | plastid | 62.79 | 80.0 |
| CDX98378 | Canola | plasma membrane | 62.5 | 79.93 |
| CDY12450 | Canola | plasma membrane | 62.5 | 79.63 |
| AT3G59500.1 | Thale cress | plasma membrane | 62.21 | 79.55 |
| Bra003379.1-P | Field mustard | plastid | 62.79 | 79.41 |
| KRH18296 | Soybean | endoplasmic reticulum | 61.63 | 78.81 |
| KRG93809 | Soybean | plastid | 61.63 | 78.81 |
| CDY00621 | Canola | plastid | 60.17 | 78.71 |
| CDX89024 | Canola | plasma membrane | 60.76 | 78.57 |
| Bra014538.1-P | Field mustard | plastid | 60.47 | 78.2 |
| KRH45179 | Soybean | plastid | 61.34 | 77.29 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 58.14 | 74.63 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 56.69 | 73.03 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 65.99 | 67.36 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 52.03 | 67.04 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 52.03 | 67.04 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 52.03 | 67.04 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 51.74 | 66.67 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 51.74 | 66.67 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 51.16 | 65.92 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 51.16 | 65.92 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 50.87 | 65.54 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 50.87 | 65.54 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 48.55 | 65.49 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 48.55 | 65.49 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 50.29 | 64.79 |
| Bra007455.1-P | Field mustard | cytosol, golgi, mitochondrion, plasma membrane | 34.88 | 64.52 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 45.35 | 64.46 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 50.0 | 63.94 |
| KXG24074 | Sorghum | plasma membrane | 49.42 | 63.67 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 48.84 | 62.92 |
| Os04t0165400-01 | Rice | cytosol | 50.87 | 62.5 |
| Zm00001d012393_P004 | Maize | extracellular | 48.84 | 62.22 |
| HORVU1Hr1G028870.1 | Barley | plastid | 27.62 | 61.69 |
| CDY05995 | Canola | plasma membrane | 32.56 | 61.54 |
| CDX71903 | Canola | plastid | 29.65 | 60.0 |
| KRH01468 | Soybean | plasma membrane | 64.83 | 57.03 |
| Solyc07g005670.1.1 | Tomato | extracellular | 45.06 | 56.99 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 21.22 | 55.3 |
| Zm00001d053686_P001 | Maize | cytosol | 51.16 | 53.5 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 52.62 | 53.39 |
Protein Annotations
| MapMan:35.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005793 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030134 | GO:GO:0030173 | UniProt:K4CU33 | PFAM:PF03878 |
| PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 | EnsemblPlantsGene:Solyc09g063020.2 | EnsemblPlants:Solyc09g063020.2.1 | TMHMM:TMhelix | UniParc:UPI000276BD59 |
| InterPro:Yif1_fam | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:60946060..60953207
Molecular Weight (calculated)
38559.2 Da
IEP (calculated)
9.776
GRAVY (calculated)
0.348
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAHPFNSIL VSKFGSALQR LICQVLTCIH YCYISIISGL SLRKGLYLKN PSAQLREALP FANRAHLFKF VQHYFSKMYD NLGAQPGGSS ANTQANPFGN
101: AFSGASSGFI RGGLGAYGEK ILGSSSHYVQ SNISRYFSDP QYYFQVNDQY VRNKLKVILF PFLHRGHWTR ITEPVGGRLS YKPPIYDINA PDLYIPFMAF
201: GTYVVLAGLS LGLQGRFSPE ALSWLFIKGL VGWFLQVSLL KMTLLSLGSG EAPLLDIVSY AGYAFAGLSI ALLGTIISNY SYYFLMPWTC LCMGIFLVKT
301: MKRVLFAEVR TYDSSSHHYL LLFIALAQFP LLFWLGKISL SWFF
101: AFSGASSGFI RGGLGAYGEK ILGSSSHYVQ SNISRYFSDP QYYFQVNDQY VRNKLKVILF PFLHRGHWTR ITEPVGGRLS YKPPIYDINA PDLYIPFMAF
201: GTYVVLAGLS LGLQGRFSPE ALSWLFIKGL VGWFLQVSLL KMTLLSLGSG EAPLLDIVSY AGYAFAGLSI ALLGTIISNY SYYFLMPWTC LCMGIFLVKT
301: MKRVLFAEVR TYDSSSHHYL LLFIALAQFP LLFWLGKISL SWFF
001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL
Arabidopsis Description
Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.