Factsheet for Bra014538.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89024	Canola	plasma membrane	99.25	99.25
Bra003379.1-P	Field mustard	plastid	93.23	91.18
AT3G59500.1	Thale cress	plasma membrane	92.11	91.08
Bra039874.1-P	Field mustard	plastid	83.83	84.15
KRH18296	Soybean	endoplasmic reticulum	80.08	79.18
KRG93809	Soybean	plastid	79.32	78.44
PGSC0003DMT400051743	Potato	plastid	78.95	78.07
PGSC0003DMT400048758	Potato	plastid	78.2	77.9
KRH45179	Soybean	plastid	79.32	77.29
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	50.75	72.58
Solyc06g083630.2.1	Tomato	plastid	78.95	71.67
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	70.68	70.15
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	69.55	69.29
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	66.17	65.92
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	66.17	65.92
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	66.17	65.92
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	65.79	65.54
EES04687	Sorghum	cytosol, plasma membrane, plastid	64.66	64.42
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	64.29	64.04
KXG24074	Sorghum	plasma membrane	64.29	64.04
TraesCS7B01G300300.1	Wheat	plasma membrane	63.91	63.67
TraesCS7A01G400200.1	Wheat	plasma membrane	63.91	63.67
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	80.45	63.5
TraesCS7D01G394000.1	Wheat	plasma membrane	63.53	63.3
EER93147	Sorghum	cytosol, plasma membrane, plastid	63.53	63.3
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	62.78	62.55
TraesCS2D01G001300.1	Wheat	plasma membrane	59.77	62.35
TraesCS2A01G001100.1	Wheat	plasma membrane	59.77	62.35
Zm00001d012393_P004	Maize	extracellular	63.16	62.22
Os04t0165400-01	Rice	cytosol	64.29	61.07
TraesCS2B01G022800.1	Wheat	plasma membrane	61.65	60.97
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	78.2	60.47
TraesCS2D01G595700.1	Wheat	plasma membrane	54.89	60.33
HORVU1Hr1G028870.1	Barley	plastid	34.21	59.09
HORVU7Hr1G094050.2	Barley	cytosol	27.44	55.3
KRH01468	Soybean	plasma membrane	78.57	53.45
Zm00001d053686_P001	Maize	cytosol	64.66	52.28
HORVU7Hr1G094010.8	Barley	mitochondrion	64.29	50.44

Protein Annotations

EnsemblPlants:Bra014538.1	EnsemblPlants:Bra014538.1-P	EnsemblPlantsGene:Bra014538	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Yif1_fam	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	PFAM:PF03878	TMHMM:TMhelix	UniParc:UPI0002543FDC
UniProt:M4DDH0	MapMan:35.2	:	:	:	:

Description

AT3G59500 (E=9e-145) | integral membrane HRF1 family protein

Coordinates

chrA04:-:1285906..1286936

Molecular Weight (calculated)

29922.7 Da

IEP (calculated)

9.386

GRAVY (calculated)

0.293

Length

266 amino acids

Sequence
(BLAST)

001: MYNNNNMGPQ PQAVPQPNPF GNAFSGPGSG LIRSGLGAYG EKIFGSSSEY VQSNITRYFS DPQYYFQVND QYVRNKLKIV LLPFLHRGHW ARISEPVGGR
101: LSYKPPLYDI NAPDLYIPLM AFGTYLVLAG FSLGLYGKFS PEALNWLFVK GMVGWFFQVM LLKMTLFSLG SGEAPLLDIV AYAGYAFTGL CLAVLGKIMW
201: GYSYYVLIPW TCLCTGVFLV KTMKRVLFAE ARSYDSSKHH YLLIFVALAQ FPLLIWLGNI SVNWLF

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.