Factsheet for Os06t0620600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G400200.1	Wheat	plasma membrane	89.14	89.14
TraesCS7B01G300300.1	Wheat	plasma membrane	88.39	88.39
EES04687	Sorghum	cytosol, plasma membrane, plastid	88.39	88.39
TraesCS7D01G394000.1	Wheat	plasma membrane	88.02	88.02
EER93147	Sorghum	cytosol, plasma membrane, plastid	86.52	86.52
HORVU1Hr1G028870.1	Barley	plastid	46.44	80.52
HORVU7Hr1G094050.2	Barley	cytosol	36.7	74.24
HORVU7Hr1G094010.8	Barley	mitochondrion	89.51	70.5
Zm00001d053686_P001	Maize	cytosol	85.02	69.0
PGSC0003DMT400091443	Potato	cytosol	31.84	68.55
PGSC0003DMT400051743	Potato	plastid	68.16	67.66
Bra003379.1-P	Field mustard	plastid	67.42	66.18
CDX98378	Canola	plasma membrane	66.67	66.17
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	66.67	66.17
CDX67799	Canola	plasma membrane	66.67	66.17
PGSC0003DMT400048758	Potato	plastid	65.92	65.92
KRH18296	Soybean	endoplasmic reticulum	66.29	65.8
Bra039874.1-P	Field mustard	plastid	65.17	65.66
KRG93809	Soybean	plastid	65.92	65.43
CDY00621	Canola	plastid	64.42	65.4
CDY52184	Canola	plastid	65.92	65.19
AT3G59500.1	Thale cress	plasma membrane	65.54	65.06
CDX89024	Canola	plasma membrane	64.42	64.66
CDY12450	Canola	plasma membrane	65.17	64.44
Bra014538.1-P	Field mustard	plastid	64.04	64.29
Solyc06g083630.2.1	Tomato	plastid	68.54	62.46
KRH45179	Soybean	plastid	63.67	62.27
Os04t0165400-01	Rice	cytosol	64.79	61.79
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	40.07	57.53
VIT_11s0037g00310.t01	Wine grape	cytosol	55.43	54.41
CDY05995	Canola	plasma membrane	37.08	54.4
Solyc07g005670.1.1	Tomato	extracellular	55.06	54.04
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	67.04	53.12
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	66.67	51.74
CDX71903	Canola	plastid	32.58	51.18
KRH01468	Soybean	plasma membrane	65.17	44.5

Protein Annotations

MapMan:35.2	EntrezGene:4341544	EMBL:AK059836	ProteinID:BAF20004.1	ProteinID:BAS98658.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005793
GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0030134	GO:GO:0030173	EnsemblPlantsGene:Os06g0620600	EnsemblPlants:Os06t0620600-01	PFAM:PF03878	PANTHER:PTHR14083
PANTHER:PTHR14083:SF6	UniProt:Q0DAW9	TMHMM:TMhelix	UniParc:UPI0000E128AD	RefSeq:XP_015641024.1	RefSeq:XP_015641025.1
InterPro:Yif1_fam	:	:	:	:	:

Description

Hrf1 family protein. (Os06t0620600-01)

Coordinates

chr6:-:24917274..24920283

Molecular Weight (calculated)

29684.4 Da

IEP (calculated)

9.872

GRAVY (calculated)

0.309

Length

267 amino acids

Sequence
(BLAST)

001: MAAMNNDLGG LGGRPATSQA NPFESALYGA GPGLIRSGLG AYGEKFLGSS SEFMQSNITQ YLSNPQYYFQ VNSQYVRNKL KVILFPFLHR GHWTRITEPV
101: GGRLSYKPPI QDINAPDLYI PLMAFGTYVV IAGYALGVLG RFTPEALTLQ FTKGLLGWFL QVILIRVLLY TLGSGEAPLL DIVAYAGYGF AGTSLAMLVR
201: VFWSPSYYFV LPWFSICTGV FLVKTMKRVL LGAPRSYERH PSRNHYFLLF LAVVQFPMLF WLGNISG

Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)

001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF

Arabidopsis Description

HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.