CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04687	Sorghum	cytosol, plasma membrane, plastid	95.13	95.13
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	88.39	88.39
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	88.39	88.39
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	88.02	88.02
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	87.64	87.64
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	86.52	86.52
TraesCS7A01G400200.1	Wheat	plasma membrane	83.52	83.52
TraesCS7B01G300300.1	Wheat	plasma membrane	83.15	83.15
TraesCS7D01G394000.1	Wheat	plasma membrane	82.77	82.77
HORVU1Hr1G028870.1	Barley	plastid	42.7	74.03
HORVU7Hr1G094050.2	Barley	cytosol	35.58	71.97
HORVU7Hr1G094010.8	Barley	mitochondrion	83.9	66.08
Bra039874.1-P	Field mustard	plastid	65.54	66.04
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	66.29	65.8
KRH18296	Soybean	endoplasmic reticulum	65.92	65.43
CDY52184	Canola	plastid	65.92	65.19
PGSC0003DMT400051743	Potato	plastid	65.54	65.06
PGSC0003DMT400048758	Potato	plastid	64.79	64.79
KRG93809	Soybean	plastid	65.17	64.68
CDY12450	Canola	plasma membrane	65.17	64.44
Bra003379.1-P	Field mustard	plastid	65.54	64.34
CDX98378	Canola	plasma membrane	64.79	64.31
CDX67799	Canola	plasma membrane	64.79	64.31
CDX89024	Canola	plasma membrane	63.67	63.91
CDY00621	Canola	plastid	62.92	63.88
AT3G59500.1	Thale cress	plasma membrane	64.04	63.57
Bra014538.1-P	Field mustard	plastid	63.3	63.53
KXG24074	Sorghum	plasma membrane	62.17	62.17
PGSC0003DMT400091443	Potato	cytosol	28.84	62.1
KRH45179	Soybean	plastid	62.17	60.81
Solyc06g083630.2.1	Tomato	plastid	65.92	60.07
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	40.07	57.53
VIT_11s0037g00310.t01	Wine grape	cytosol	56.18	55.15
CDY05995	Canola	plasma membrane	36.7	53.85
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	65.17	51.63
CDX71903	Canola	plastid	32.58	51.18
Solyc07g005670.1.1	Tomato	extracellular	51.69	50.74
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	64.79	50.29
KRH01468	Soybean	plasma membrane	63.3	43.22

Protein Annotations

MapMan:35.2	EntrezGene:8080197	UniProt:C5WTY9	EnsemblPlants:EER93147	ProteinID:EER93147	ProteinID:EER93147.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0005793	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030134	GO:GO:0030173	PFAM:PF03878	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6
EnsemblPlantsGene:SORBI_3001G023600	TMHMM:TMhelix	UniParc:UPI0001A828FC	RefSeq:XP_002466149.1	InterPro:Yif1_fam	:

Description

hypothetical protein

Coordinates

chr1:-:1883564..1885539

Molecular Weight (calculated)

29702.4 Da

IEP (calculated)

9.783

GRAVY (calculated)

0.282

Length

267 amino acids

Sequence
(BLAST)

001: MAAMNSDLGG LGGRPANPQA NPFGTALHGA GSGLIRTGLE AYGGRIIDSS SEFMQSNITQ YLSNPQYYFQ VNSQYVRNKL KVILFPFLHR GHWTRITEPV
101: GGRLSYKPPV QDINAPDLYI PLMAFGTYII VAGYALGVLG RFTPEALTLQ FSKGILGWFL QVMLIKGLLY SLGSSEAPLL DVVAYAGYGF AGTSLAMLAR
201: IFWSYLYYFI MPWFCICTGV FLVKTMKRVL LGGPRSYERH PSRNHYFLLF LAAVQFPMLF WLSNISG

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.