Factsheet for PGSC0003DMT400051743

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048758	Potato	plastid	91.82	92.51
Solyc06g083630.2.1	Tomato	plastid	99.26	91.13
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	82.53	82.53
Bra039874.1-P	Field mustard	plastid	80.67	81.89
CDY52184	Canola	plastid	81.78	81.48
CDY12450	Canola	plasma membrane	81.04	80.74
CDX67799	Canola	plasma membrane	80.67	80.67
AT3G59500.1	Thale cress	plasma membrane	80.3	80.3
CDX98378	Canola	plasma membrane	80.3	80.3
Bra003379.1-P	Field mustard	plastid	80.67	79.78
CDX89024	Canola	plasma membrane	78.81	79.7
CDY00621	Canola	plastid	77.7	79.47
Bra014538.1-P	Field mustard	plastid	78.07	78.95
KRH18296	Soybean	endoplasmic reticulum	78.07	78.07
KRH45179	Soybean	plastid	79.18	78.02
KRG93809	Soybean	plastid	77.32	77.32
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	74.35	74.63
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	72.12	72.66
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	67.66	68.16
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	67.66	68.16
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	67.66	68.16
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	67.66	68.16
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	67.29	67.79
TraesCS7B01G300300.1	Wheat	plasma membrane	66.17	66.67
TraesCS7A01G400200.1	Wheat	plasma membrane	66.17	66.67
TraesCS2D01G001300.1	Wheat	plasma membrane	63.2	66.67
TraesCS2A01G001100.1	Wheat	plasma membrane	63.2	66.67
TraesCS7D01G394000.1	Wheat	plasma membrane	65.8	66.29
PGSC0003DMT400091443	Potato	cytosol	30.48	66.13
TraesCS2D01G595700.1	Wheat	plasma membrane	59.48	66.12
EES04687	Sorghum	cytosol, plasma membrane, plastid	65.43	65.92
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	82.16	65.58
EER93147	Sorghum	cytosol, plasma membrane, plastid	65.06	65.54
KXG24074	Sorghum	plasma membrane	64.31	64.79
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	64.31	64.79
TraesCS2B01G022800.1	Wheat	plasma membrane	64.68	64.68
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	44.24	63.98
Zm00001d012393_P004	Maize	extracellular	63.57	63.33
Os04t0165400-01	Rice	cytosol	65.43	62.86
CDX71903	Canola	plastid	39.03	61.76
HORVU1Hr1G028870.1	Barley	plastid	35.32	61.69
CDY05995	Canola	plasma membrane	40.15	59.34
HORVU7Hr1G094050.2	Barley	cytosol	27.14	55.3
KRH01468	Soybean	plasma membrane	79.18	54.48
Zm00001d053686_P001	Maize	cytosol	65.43	53.5
HORVU7Hr1G094010.8	Barley	mitochondrion	66.54	52.8

Protein Annotations

EntrezGene:102604978	MapMan:35.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:M1BS54
PFAM:PF03878	EnsemblPlantsGene:PGSC0003DMG402020085	PGSC:PGSC0003DMG402020085	EnsemblPlants:PGSC0003DMT400051743	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6
TMHMM:TMhelix	UniParc:UPI000294987D	RefSeq:XP_006352709.1	RefSeq:XP_006352710.1	RefSeq:XP_006352711.1	RefSeq:XP_015166525.1
RefSeq:XP_015166527.1	RefSeq:XP_015166528.1	RefSeq:XP_015166529.1	RefSeq:XP_015166530.1	InterPro:Yif1_fam	SEG:seg

Description

Protein YIF1A [Source:PGSC_GENE;Acc:PGSC0003DMG402020085]

Coordinates

chr6:-:58513948..58518525

Molecular Weight (calculated)

30260.9 Da

IEP (calculated)

9.573

GRAVY (calculated)

0.307

Length

269 amino acids

Sequence
(BLAST)

001: MYDNLGAQSG VPRPPGNIQA NPFGNAFSGG SSGFIRSGLG AYGEKILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRITEPV
101: GGRLSYKPPI FDINAPDLYI PFMAFGTYVV LAGLSLGLQG RFTPEALNWL FIKGLVGWFL EVSLLKMTLF SLGSGEAPLL DIVSYAGYAF AGLSIALLGT
201: IIWSHSYYFL MPWTSLCMGI FLVKTMKRVL FAEVRTYDSS RHHYLLLFIA LAQFPLLFWL GKISLNWFF

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.