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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, golgi, cytosol

Predictor Summary:
  • plastid 1
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, mitochondrion, plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY05995 Canola plasma membrane 80.65 82.42
AT3G59500.1 Thale cress plasma membrane 75.27 52.04
Bra014538.1-P Field mustard plastid 72.58 50.75
Bra003379.1-P Field mustard plastid 74.19 50.74
Bra039874.1-P Field mustard plastid 69.89 49.06
KRH18296 Soybean endoplasmic reticulum 67.2 46.47
KRG93809 Soybean plastid 66.67 46.1
PGSC0003DMT400048758 Potato plastid 64.52 44.94
PGSC0003DMT400051743 Potato plastid 63.98 44.24
KRH45179 Soybean plastid 64.52 43.96
GSMUA_Achr5P15070_001 Banana cytosol, plasma membrane, plastid 60.75 42.16
GSMUA_Achr4P22340_001 Banana cytosol, plasma membrane, plastid 59.68 41.57
KXG24074 Sorghum plasma membrane 59.14 41.2
TraesCS6A01G167600.1 Wheat cytosol, plasma membrane, plastid 59.14 41.2
TraesCS6D01G156600.1 Wheat cytosol, plasma membrane, plastid 59.14 41.2
HORVU6Hr1G034030.2 Barley cytosol, plasma membrane, plastid 59.14 41.2
TraesCS6B01G195300.1 Wheat cytosol, plasma membrane, plastid 58.6 40.82
Solyc06g083630.2.1 Tomato plastid 63.98 40.61
EES04687 Sorghum cytosol, plasma membrane, plastid 58.06 40.45
TraesCS2A01G001100.1 Wheat plasma membrane 55.38 40.39
TraesCS2D01G001300.1 Wheat plasma membrane 55.38 40.39
HORVU7Hr1G094050.2 Barley cytosol 28.49 40.15
TraesCS7A01G400200.1 Wheat plasma membrane 57.53 40.07
Os06t0620600-01 Rice cytosol, plasma membrane, plastid 57.53 40.07
Zm00001d041267_P001 Maize cytosol, plasma membrane, plastid, vacuole 57.53 40.07
TraesCS7B01G300300.1 Wheat plasma membrane 57.53 40.07
TraesCS7D01G394000.1 Wheat plasma membrane 57.53 40.07
EER93147 Sorghum cytosol, plasma membrane, plastid 57.53 40.07
Zm00001d012393_P004 Maize extracellular 56.99 39.26
TraesCS2B01G022800.1 Wheat plasma membrane 55.91 38.66
Os04t0165400-01 Rice cytosol 57.53 38.21
TraesCS2D01G595700.1 Wheat plasma membrane 46.77 35.95
VIT_05s0102g00730.t01 Wine grape endoplasmic reticulum, plasma membrane 65.05 35.91
Solyc09g063020.2.1 Tomato endoplasmic reticulum, plasma membrane, plastid 64.52 34.88
HORVU1Hr1G028870.1 Barley plastid 27.96 33.77
Zm00001d053686_P001 Maize cytosol 59.14 33.43
HORVU7Hr1G094010.8 Barley mitochondrion 57.53 31.56
KRH01468 Soybean plasma membrane 63.44 30.18
Protein Annotations
EnsemblPlants:Bra007455.1EnsemblPlants:Bra007455.1-PEnsemblPlantsGene:Bra007455GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Yif1_famPANTHER:PTHR14083PANTHER:PTHR14083:SF6PFAM:PF03878SEG:segTMHMM:TMhelix
UniParc:UPI0002542ECFUniProt:M4CTB2MapMan:35.2:::
Description
AT3G59500 (E=1e-032) | integral membrane HRF1 family protein
Coordinates
chrA09:+:29292253..29293300
Molecular Weight (calculated)
21095.3 Da
IEP (calculated)
9.287
GRAVY (calculated)
0.359
Length
186 amino acids
Sequence
(BLAST)
001: MNSYQWRELT RSGFTKMNDQ YVRNKLKIVL LPFLHRGHWT RISEPIEGRL SYKPPIYDIN APDLYIPLMA FGTYLVLDVL SLGLCGKNGW LVFLQVMLLE
101: ITLLSLGSGE SPLLDIVAYA GYANAGLCLA VLCKTIWGYS YYVLIPRTCL CTGVFLVKTM KRVLFAEAKS YVTQAGIIRE RTPLML
Best Arabidopsis Sequence Match ( AT3G59500.2 )
(BLAST)
001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF
Arabidopsis Description
HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.