Factsheet for PGSC0003DMT400048758

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051743	Potato	plastid	92.51	91.82
AT1G30890.1	Thale cress	cytosol, plasma membrane, plastid	83.15	82.53
Bra039874.1-P	Field mustard	plastid	80.15	80.75
CDY52184	Canola	plastid	81.27	80.37
CDX67799	Canola	plasma membrane	80.9	80.3
CDY12450	Canola	plasma membrane	80.9	80.0
CDX98378	Canola	plasma membrane	80.52	79.93
AT3G59500.1	Thale cress	plasma membrane	80.15	79.55
KRH18296	Soybean	endoplasmic reticulum	80.15	79.55
Bra003379.1-P	Field mustard	plastid	80.9	79.41
KRG93809	Soybean	plastid	79.4	78.81
CDX89024	Canola	plasma membrane	78.28	78.57
CDY00621	Canola	plastid	77.15	78.33
Bra014538.1-P	Field mustard	plastid	77.9	78.2
KRH45179	Soybean	plastid	79.78	78.02
Solyc09g063020.2.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	98.13	76.16
GSMUA_Achr5P15070_001	Banana	cytosol, plasma membrane, plastid	74.91	74.63
GSMUA_Achr4P22340_001	Banana	cytosol, plasma membrane, plastid	73.03	73.03
PGSC0003DMT400091443	Potato	cytosol	31.09	66.94
HORVU6Hr1G034030.2	Barley	cytosol, plasma membrane, plastid	66.67	66.67
TraesCS6A01G167600.1	Wheat	cytosol, plasma membrane, plastid	66.67	66.67
TraesCS6D01G156600.1	Wheat	cytosol, plasma membrane, plastid	66.67	66.67
TraesCS6B01G195300.1	Wheat	cytosol, plasma membrane, plastid	66.29	66.29
TraesCS2D01G001300.1	Wheat	plasma membrane	63.3	66.27
TraesCS2A01G001100.1	Wheat	plasma membrane	63.3	66.27
Os06t0620600-01	Rice	cytosol, plasma membrane, plastid	65.92	65.92
VIT_05s0102g00730.t01	Wine grape	endoplasmic reticulum, plasma membrane	82.77	65.58
TraesCS2D01G595700.1	Wheat	plasma membrane	59.18	65.29
EES04687	Sorghum	cytosol, plasma membrane, plastid	65.17	65.17
TraesCS7A01G400200.1	Wheat	plasma membrane	65.17	65.17
TraesCS7B01G300300.1	Wheat	plasma membrane	65.17	65.17
TraesCS7D01G394000.1	Wheat	plasma membrane	64.79	64.79
EER93147	Sorghum	cytosol, plasma membrane, plastid	64.79	64.79
TraesCS2B01G022800.1	Wheat	plasma membrane	65.17	64.68
Bra007455.1-P	Field mustard	cytosol, golgi, mitochondrion, plasma membrane	44.94	64.52
KXG24074	Sorghum	plasma membrane	64.42	64.42
Zm00001d041267_P001	Maize	cytosol, plasma membrane, plastid, vacuole	63.67	63.67
Os04t0165400-01	Rice	cytosol	66.29	63.21
Zm00001d012393_P004	Maize	extracellular	63.67	62.96
CDY05995	Canola	plasma membrane	41.95	61.54
HORVU1Hr1G028870.1	Barley	plastid	34.83	60.39
CDX71903	Canola	plastid	38.2	60.0
HORVU7Hr1G094050.2	Barley	cytosol	27.34	55.3
KRH01468	Soybean	plasma membrane	80.15	54.73
Zm00001d053686_P001	Maize	cytosol	65.17	52.89
HORVU7Hr1G094010.8	Barley	mitochondrion	65.54	51.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400048758	EnsemblPlantsGene:PGSC0003DMG400018951	EntrezGene:102585271	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Yif1_fam	PANTHER:PTHR14083	PANTHER:PTHR14083:SF6	PFAM:PF03878	PGSC:PGSC0003DMG400018951	RefSeq:XP_006350294.1
TMHMM:TMhelix	UniParc:UPI0002960D30	UniProt:M1BMV3	MapMan:35.2	:	:

Description

Protein YIF1A [Source:PGSC_GENE;Acc:PGSC0003DMG400018951]

Coordinates

chr9:-:45471047..45478424

Molecular Weight (calculated)

29776.3 Da

IEP (calculated)

9.403

GRAVY (calculated)

0.337

Length

267 amino acids

Sequence
(BLAST)

001: MYDNLGAQPG GPPANTQANP FGNAFSGASS GFIRGGLGAY GEKILGSSSH YVQSNVSRYF SDPQYYFQVN DQYVRNKLKV ILFPFLHRGH WTRITEPVGG
101: RLSYKPPIYD INAPDLYIPF MAFGTYVVLA GLSLGLQGRF SPEALSWLFI KGLVGWFLQV SLLKMTLLSL GSGEAPLLDI VSYAGYAFAG LSIALLGTII
201: SNYSYYFLMP WTCLCMGIFL VKTMKRVLFA EVRTYDSSSH HYLLLFIALA QFPLLFWLGK ISLNWFL

Best Arabidopsis Sequence Match ( AT1G30890.1 )
(BLAST)

001: MYNNMGPQPG MPRPPGNPEP GPFGNPFTGA GSGFIRGGLG AYGERILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KVVLFPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PFMAFGTYVV LAGLSLGLNG KFTPEALNWL FVKGLVGWFL QVMLLKVTLL SLGSGEAPLL DIVAYGGYAF AGLCLAGFAK
201: IMWGYSYYAL MPWTCLCTGI FLVKTMKRVL FAEVRSYDSS KHHYLLLFLA LVQFPLLIWL GNISVNWLL

Arabidopsis Description

Integral membrane HRF1 family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ9]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.