Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89024 | Canola | plasma membrane | 74.71 | 47.74 |
| CDX67799 | Canola | plasma membrane | 74.71 | 47.21 |
| AT3G59500.1 | Thale cress | plasma membrane | 74.12 | 46.84 |
| CDX98378 | Canola | plasma membrane | 73.53 | 46.47 |
| CDY00621 | Canola | plastid | 71.18 | 46.01 |
| CDY12450 | Canola | plasma membrane | 68.24 | 42.96 |
| CDY52184 | Canola | plastid | 68.24 | 42.96 |
| KRH18296 | Soybean | endoplasmic reticulum | 63.53 | 40.15 |
| KRG93809 | Soybean | plastid | 62.35 | 39.41 |
| PGSC0003DMT400051743 | Potato | plastid | 61.76 | 39.03 |
| KRH45179 | Soybean | plastid | 61.76 | 38.46 |
| PGSC0003DMT400048758 | Potato | plastid | 60.0 | 38.2 |
| Solyc06g083630.2.1 | Tomato | plastid | 62.94 | 36.52 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 57.06 | 36.19 |
| KXG24074 | Sorghum | plasma membrane | 55.88 | 35.58 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 54.12 | 34.46 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 48.82 | 34.3 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 53.53 | 34.08 |
| Zm00001d012393_P004 | Maize | extracellular | 54.12 | 34.07 |
| Os04t0165400-01 | Rice | cytosol | 55.29 | 33.57 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 52.35 | 33.33 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 52.35 | 33.33 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 52.35 | 33.33 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 52.35 | 33.33 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 51.76 | 32.96 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 64.71 | 32.64 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 51.18 | 32.58 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 51.18 | 32.58 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 51.18 | 32.58 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 51.18 | 32.58 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 50.59 | 32.21 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 49.41 | 31.23 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 46.47 | 30.98 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 46.47 | 30.98 |
| CDY05995 | Canola | plasma membrane | 32.94 | 30.77 |
| HORVU1Hr1G028870.1 | Barley | plastid | 27.65 | 30.52 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 23.53 | 30.3 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 60.0 | 29.65 |
| KRH01468 | Soybean | plasma membrane | 60.59 | 26.34 |
| Zm00001d053686_P001 | Maize | cytosol | 50.59 | 26.14 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 51.18 | 25.66 |
Protein Annotations
| EnsemblPlants:CDX71903 | EnsemblPlantsGene:GSBRNA2T00155643001 | GO:A0A078CA56 | InterPro:Yif1_fam | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 |
| ProteinID:CDX71903 | ProteinID:CDX71903.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDB2E3 | MapMan:35.2 |
Description
BnaC08g29710D
Coordinates
chrLK031795:-:1093286..1095462
Molecular Weight (calculated)
19258.7 Da
IEP (calculated)
9.102
GRAVY (calculated)
0.305
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEMYNNNMG PHPWMPMPQP NPFGNAFSGL IRSGLGSSSE GLWTRISEPV GGRLSYKPPI HDILVHQTYT FPSWPLALIS FLLVSLGLYG KLCFHWSLLG
101: KIIWGYSYYV LIPWTCLCTG VLLVKTMKRV LFAEARSYDS SRKSLPLDFL ALAQFPLLIW LGNISVDWLF
101: KIIWGYSYYV LIPWTCLCTG VLLVKTMKRV LFAEARSYDS SRKSLPLDFL ALAQFPLLIW LGNISVDWLF
001: MDVLYRSGET QQGVATYTPR LVSVNLKGAL GTMSSRGTLY NEGSSSRSDS SATWFGDVDT QRSEPRKRNL FLQSLYEEEH VVGKEKAKEI EDKDIVGCLD
101: EEVECWTDFS KSHYHPQSLY ELNGLWMDSQ AFNNYGIGKD VFSEASRGEE ICDRLRFFVE ECDHIQGIKF LVDDSGGFSA VAADFLENMA DEYTNVPVLL
201: YSVRTPMSQM SSKKTVSNKL HDAISFSRLS SFCKLFTPIG LPSLTGSKAS KFLNLGDEKP YRSSAVYAAA LHSSTIPFRM QPTSSDSSEV SNSMDVNTLV
301: QLLTGRGRQN IVAILDSAMP APTLAGKQLE NTLLTSLQAL TPEVTEDVED NQAVESMCIL GALRSEDKEA LVSEVKNAVD ASYEQATTKG KPLFCNLSVS
401: RCPLPVPLPF PSIFGNLVGR KGEILSSPVS DSLYRGSLDV HSIPVATRWR SSSAILPFLE TRMGNLEKLG IQWGAMGSDV VRAWGFGREE LQEMRENLSK
501: MVSELNPQFF ESSDSD
101: EEVECWTDFS KSHYHPQSLY ELNGLWMDSQ AFNNYGIGKD VFSEASRGEE ICDRLRFFVE ECDHIQGIKF LVDDSGGFSA VAADFLENMA DEYTNVPVLL
201: YSVRTPMSQM SSKKTVSNKL HDAISFSRLS SFCKLFTPIG LPSLTGSKAS KFLNLGDEKP YRSSAVYAAA LHSSTIPFRM QPTSSDSSEV SNSMDVNTLV
301: QLLTGRGRQN IVAILDSAMP APTLAGKQLE NTLLTSLQAL TPEVTEDVED NQAVESMCIL GALRSEDKEA LVSEVKNAVD ASYEQATTKG KPLFCNLSVS
401: RCPLPVPLPF PSIFGNLVGR KGEILSSPVS DSLYRGSLDV HSIPVATRWR SSSAILPFLE TRMGNLEKLG IQWGAMGSDV VRAWGFGREE LQEMRENLSK
501: MVSELNPQFF ESSDSD
Arabidopsis Description
At4g37190 [Source:UniProtKB/TrEMBL;Acc:O23167]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.