Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 98.5 | 98.5 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 97.38 | 97.38 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 88.39 | 88.39 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 85.02 | 85.02 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 84.27 | 84.27 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 83.15 | 83.15 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 39.33 | 79.55 |
| PGSC0003DMT400051743 | Potato | plastid | 66.67 | 66.17 |
| Zm00001d053686_P001 | Maize | cytosol | 81.27 | 65.96 |
| PGSC0003DMT400091443 | Potato | cytosol | 30.34 | 65.32 |
| PGSC0003DMT400048758 | Potato | plastid | 65.17 | 65.17 |
| CDX98378 | Canola | plasma membrane | 65.54 | 65.06 |
| CDY00621 | Canola | plastid | 64.04 | 65.02 |
| Bra003379.1-P | Field mustard | plastid | 65.92 | 64.71 |
| CDX67799 | Canola | plasma membrane | 65.17 | 64.68 |
| AT3G59500.1 | Thale cress | plasma membrane | 64.79 | 64.31 |
| CDX89024 | Canola | plasma membrane | 64.04 | 64.29 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 64.42 | 63.94 |
| KRH18296 | Soybean | endoplasmic reticulum | 64.42 | 63.94 |
| Bra014538.1-P | Field mustard | plastid | 63.67 | 63.91 |
| Bra039874.1-P | Field mustard | plastid | 63.3 | 63.77 |
| KRG93809 | Soybean | plastid | 64.04 | 63.57 |
| CDY52184 | Canola | plastid | 63.67 | 62.96 |
| CDY12450 | Canola | plasma membrane | 62.92 | 62.22 |
| KRH45179 | Soybean | plastid | 62.92 | 61.54 |
| Solyc06g083630.2.1 | Tomato | plastid | 67.04 | 61.09 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 61.05 | 60.59 |
| Bra007455.1-P | Field mustard | cytosol, golgi, mitochondrion, plasma membrane | 40.07 | 57.53 |
| CDY05995 | Canola | plasma membrane | 37.83 | 55.49 |
| Solyc07g005670.1.1 | Tomato | extracellular | 54.68 | 53.68 |
| VIT_11s0037g00310.t01 | Wine grape | cytosol | 53.93 | 52.94 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 65.17 | 51.63 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 65.92 | 51.16 |
| CDX71903 | Canola | plastid | 32.21 | 50.59 |
| KRH01468 | Soybean | plasma membrane | 64.04 | 43.73 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G300300.1 | EnsemblPlantsGene:TraesCS7B01G300300 | InterPro:Yif1_fam | PANTHER:PTHR14083 | PANTHER:PTHR14083:SF6 | PFAM:PF03878 |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:537671899..537673195
Molecular Weight (calculated)
29890.6 Da
IEP (calculated)
9.766
GRAVY (calculated)
0.275
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMNIDLGG LAGRPTTSQA DPFQSALYGA GPELIRSGLG AYSEKFLGSS SDFMQSNITQ YLSNPQYYFQ VNNQYVRNKL KVVLFPFLHR GHWTRITEPV
101: GGRLSYKPPV QDINAPDLYI PLMAFATYIV VAGYALGVLG RFTPEALTIQ FTKGLLGWFM QVILIKALLY SLGSGESPLL DIVAYAGYGF AGTSLAMLVR
201: IFWSYSYYFL LPWFCICTGV FLVKTMKRVL QGASRTFERH PSRNHYFLLF LAAAQFPMLF WLGNIKG
101: GGRLSYKPPV QDINAPDLYI PLMAFATYIV VAGYALGVLG RFTPEALTIQ FTKGLLGWFM QVILIKALLY SLGSGESPLL DIVAYAGYGF AGTSLAMLVR
201: IFWSYSYYFL LPWFCICTGV FLVKTMKRVL QGASRTFERH PSRNHYFLLF LAAAQFPMLF WLGNIKG
001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF
Arabidopsis Description
HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.