Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93809 | Soybean | plastid | 98.88 | 98.88 |
| KRH45179 | Soybean | plastid | 86.62 | 85.35 |
| CDX67799 | Canola | plasma membrane | 82.9 | 82.9 |
| CDX98378 | Canola | plasma membrane | 82.53 | 82.53 |
| Bra003379.1-P | Field mustard | plastid | 82.9 | 81.99 |
| AT3G59500.1 | Thale cress | plasma membrane | 81.78 | 81.78 |
| AT1G30890.1 | Thale cress | cytosol, plasma membrane, plastid | 81.04 | 81.04 |
| CDX89024 | Canola | plasma membrane | 79.93 | 80.83 |
| CDY00621 | Canola | plastid | 78.81 | 80.61 |
| PGSC0003DMT400048758 | Potato | plastid | 79.55 | 80.15 |
| Bra014538.1-P | Field mustard | plastid | 79.18 | 80.08 |
| Bra039874.1-P | Field mustard | plastid | 78.44 | 79.62 |
| CDY12450 | Canola | plasma membrane | 79.55 | 79.26 |
| CDY52184 | Canola | plastid | 79.55 | 79.26 |
| PGSC0003DMT400051743 | Potato | plastid | 78.07 | 78.07 |
| GSMUA_Achr5P15070_001 | Banana | cytosol, plasma membrane, plastid | 73.23 | 73.51 |
| GSMUA_Achr4P22340_001 | Banana | cytosol, plasma membrane, plastid | 72.86 | 73.41 |
| Solyc06g083630.2.1 | Tomato | plastid | 78.07 | 71.67 |
| TraesCS6A01G167600.1 | Wheat | cytosol, plasma membrane, plastid | 67.66 | 68.16 |
| HORVU6Hr1G034030.2 | Barley | cytosol, plasma membrane, plastid | 67.66 | 68.16 |
| TraesCS6D01G156600.1 | Wheat | cytosol, plasma membrane, plastid | 67.66 | 68.16 |
| TraesCS6B01G195300.1 | Wheat | cytosol, plasma membrane, plastid | 67.29 | 67.79 |
| VIT_05s0102g00730.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 84.39 | 67.36 |
| Bra007455.1-P | Field mustard | cytosol, golgi, mitochondrion, plasma membrane | 46.47 | 67.2 |
| Os06t0620600-01 | Rice | cytosol, plasma membrane, plastid | 65.8 | 66.29 |
| EES04687 | Sorghum | cytosol, plasma membrane, plastid | 65.8 | 66.29 |
| EER93147 | Sorghum | cytosol, plasma membrane, plastid | 65.43 | 65.92 |
| TraesCS2A01G001100.1 | Wheat | plasma membrane | 61.34 | 64.71 |
| TraesCS2D01G001300.1 | Wheat | plasma membrane | 61.34 | 64.71 |
| TraesCS7B01G300300.1 | Wheat | plasma membrane | 63.94 | 64.42 |
| TraesCS7A01G400200.1 | Wheat | plasma membrane | 63.94 | 64.42 |
| TraesCS2D01G595700.1 | Wheat | plasma membrane | 57.62 | 64.05 |
| KXG24074 | Sorghum | plasma membrane | 63.57 | 64.04 |
| TraesCS7D01G394000.1 | Wheat | plasma membrane | 63.57 | 64.04 |
| Zm00001d041267_P001 | Maize | cytosol, plasma membrane, plastid, vacuole | 63.2 | 63.67 |
| CDX71903 | Canola | plastid | 40.15 | 63.53 |
| Os04t0165400-01 | Rice | cytosol | 65.8 | 63.21 |
| TraesCS2B01G022800.1 | Wheat | plasma membrane | 63.2 | 63.2 |
| Zm00001d012393_P004 | Maize | extracellular | 63.2 | 62.96 |
| CDY05995 | Canola | plasma membrane | 42.01 | 62.09 |
| Solyc09g063020.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 78.81 | 61.63 |
| HORVU1Hr1G028870.1 | Barley | plastid | 34.57 | 60.39 |
| KRH01468 | Soybean | plasma membrane | 86.25 | 59.34 |
| HORVU7Hr1G094050.2 | Barley | cytosol | 27.88 | 56.82 |
| Zm00001d053686_P001 | Maize | cytosol | 65.06 | 53.19 |
| HORVU7Hr1G094010.8 | Barley | mitochondrion | 64.31 | 51.03 |
Protein Annotations
| MapMan:35.2 | EMBL:ACUP02008055 | EnsemblPlantsGene:GLYMA_13G049600 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005793 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0006888 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030134 | GO:GO:0030173 |
| UniProt:I1LWY9 | EnsemblPlants:KRH18296 | ProteinID:KRH18296 | ProteinID:KRH18296.1 | PFAM:PF03878 | PANTHER:PTHR14083 |
| PANTHER:PTHR14083:SF6 | TMHMM:TMhelix | UniParc:UPI000233C2EF | InterPro:Yif1_fam | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr13:+:14552990..14556762
Molecular Weight (calculated)
29903.9 Da
IEP (calculated)
9.533
GRAVY (calculated)
0.393
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNVGSQPG VQQPQTSLPP NPFGSAFNVA GSGLIRGGLG AYGGKILGSS SEYVQSNISR YFSDPQYYFQ VNDQYVKNKL KVVLLPFLHR GHWTRITEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVI LAGLSLGLHG KFSPEALNLL FIKGLLGWFM QAALLKVTLL SLGSGEAPLL DIIAYAGYTF TGICLAVLGR
201: IILGYSYYFL MPWTCLCMGV FLVKTMKRVL FAEVRSYDSS RHHYLLLFIA LVQFPLFTWL GNITINWLL
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVI LAGLSLGLHG KFSPEALNLL FIKGLLGWFM QAALLKVTLL SLGSGEAPLL DIIAYAGYTF TGICLAVLGR
201: IILGYSYYFL MPWTCLCMGV FLVKTMKRVL FAEVRSYDSS RHHYLLLFIA LVQFPLFTWL GNITINWLL
001: MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF
101: GGRLSYKPPI YDINAPDLYI PLMAFGTYVV LAGLSLGLYG KFTPEALNWL FVKGMVGWFL QVMLLKITLL SLGSGEAPLL DIVAYAGYTF TGLCLAVLGK
201: IIWGYSYYVL IPWTCLCTGV FLVKTMKRVL FAESRSYDSS RHHYLLIFVA LAQFPLLIWL GNISVNWLF
Arabidopsis Description
HRF1 protein [Source:UniProtKB/TrEMBL;Acc:F4J8C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.